Variant report

Variant	rs277651
Chromosome Location	chr3:100069699-100069700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100069327..100070989-chr3:100072789..100075380,2	K562	blood:
2	chr3:100067925..100070797-chr3:100070813..100073426,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10936180	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1123578	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1214377	0.80[AFR][1000 genomes]
rs1214380	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1214381	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1228184	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530283	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs166747	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277620	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277622	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs277623	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277626	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277628	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs277629	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277630	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs277633	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277634	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs277635	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277638	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs277642	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs277644	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372438	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772692	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3806615	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs392066	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs402870	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs413425	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs431069	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs432715	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6780662	0.88[ASN][1000 genomes]
rs6791102	0.88[ASN][1000 genomes]
rs6794955	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7616634	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641630	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100054200-100081000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:100054600-100102600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:100054800-100081000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:100054800-100097200	Weak transcription	Stomach Mucosa	stomach
5	chr3:100054800-100102200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:100055000-100082400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:100055200-100071000	Weak transcription	HepG2	liver
8	chr3:100057800-100071400	Weak transcription	Fetal Heart	heart
9	chr3:100063200-100071200	Weak transcription	K562	blood
10	chr3:100063400-100072000	Weak transcription	HUVEC	blood vessel
11	chr3:100064200-100070000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:100064200-100071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:100066400-100071200	Weak transcription	NHLF	lung
14	chr3:100067200-100070000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:100067600-100069800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:100068200-100069800	Strong transcription	Fetal Lung	lung
17	chr3:100069000-100069800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:100069200-100069800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:100069200-100071000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:100069400-100071200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:100069400-100071200	Weak transcription	Psoas Muscle	Psoas
22	chr3:100069400-100082400	Weak transcription	Fetal Brain Male	brain
23	chr3:100069600-100071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:100069600-100071000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:100069600-100071000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:100069600-100071000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:100069600-100071000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:100069600-100071000	Weak transcription	Primary B cells from cord blood	blood
29	chr3:100069600-100071000	Weak transcription	Primary T cells from cord blood	blood
30	chr3:100069600-100071000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:100069600-100071000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:100069600-100071000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:100069600-100071000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:100069600-100071000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:100069600-100071000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:100069600-100071000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:100069600-100071000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:100069600-100071000	Weak transcription	Liver	Liver
39	chr3:100069600-100071000	Weak transcription	Fetal Brain Female	brain
40	chr3:100069600-100071000	Weak transcription	Fetal Intestine Large	intestine
41	chr3:100069600-100071000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:100069600-100071000	Weak transcription	Placenta	Placenta
43	chr3:100069600-100071000	Weak transcription	Fetal Thymus	thymus
44	chr3:100069600-100071000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:100069600-100071000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:100069600-100071000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:100069600-100071000	Weak transcription	GM12878-XiMat	blood
48	chr3:100069600-100071000	Weak transcription	HSMM	muscle
49	chr3:100069600-100071000	Weak transcription	Osteobl	bone
50	chr3:100069600-100071200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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