Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934208	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10934209	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11535080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11536316	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11543524	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11560149	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11920028	0.86[EUR][1000 genomes]
rs56666099	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56710227	0.86[EUR][1000 genomes]
rs56820451	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57287136	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57360909	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58105957	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58514942	1.00[AMR][1000 genomes]
rs59890654	1.00[AMR][1000 genomes]
rs60481719	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60671920	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61191442	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61526975	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61674636	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72491118	0.86[EUR][1000 genomes]
rs72952104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112628000-112634800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:112628000-112634800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:112628000-112635200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:112628000-112641800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:112628000-112642000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:112628000-112642000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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