Variant report

Variant	rs60671920
Chromosome Location	chr3:112613073-112613074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10934208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11535080	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11536316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11543524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11560149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233476	0.99[ASN][1000 genomes]
rs12233479	0.98[ASN][1000 genomes]
rs12233601	0.99[ASN][1000 genomes]
rs1249526	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16860145	0.98[ASN][1000 genomes]
rs2293559	1.00[AFR][1000 genomes]
rs4146774	1.00[AFR][1000 genomes]
rs4682435	0.96[ASN][1000 genomes]
rs56206000	0.98[ASN][1000 genomes]
rs56247644	0.99[ASN][1000 genomes]
rs56666099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56710227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56820451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57287136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57360909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58105957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58271800	1.00[AFR][1000 genomes]
rs58514942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59292601	0.98[ASN][1000 genomes]
rs59890654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60481719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60761581	0.99[ASN][1000 genomes]
rs61191442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61526975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61674636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72491118	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72952104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112604200-112616400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:112608800-112613200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:112608800-112613200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:112608800-112613200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:112608800-112614800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:112612000-112617400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:112612400-112614400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:112612600-112613600	Enhancers	HSMM	muscle
9	chr3:112612800-112613600	Enhancers	A549	lung
10	chr3:112612800-112613800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:112612800-112613800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:112612800-112614200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:112612800-112615600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:112613000-112613600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:112613000-112613600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:112613000-112613600	Enhancers	HSMMtube	muscle
17	chr3:112613000-112615800	Enhancers	HUES48 Cell Line	embryonic stem cell

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