Variant report

Variant	rs60481719
Chromosome Location	chr3:112578331-112578332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10934208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10934209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11535080	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11536316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11543524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11560149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920028	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12233476	1.00[ASN][1000 genomes]
rs12233479	0.99[ASN][1000 genomes]
rs12233601	1.00[ASN][1000 genomes]
rs1249526	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16860145	0.99[ASN][1000 genomes]
rs2293559	1.00[AFR][1000 genomes]
rs4146774	1.00[AFR][1000 genomes]
rs4682435	0.98[ASN][1000 genomes]
rs56206000	0.99[ASN][1000 genomes]
rs56247644	1.00[ASN][1000 genomes]
rs56666099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56710227	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56820451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57287136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57360909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58105957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58271800	1.00[AFR][1000 genomes]
rs58514942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59292601	0.99[ASN][1000 genomes]
rs59890654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60671920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60761581	1.00[ASN][1000 genomes]
rs61191442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61526975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61674636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72491118	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72952104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112574600-112578600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:112574800-112578400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:112575200-112578800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:112576400-112578400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:112577800-112579800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:112577800-112580600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:112578000-112579800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:112578200-112579800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links