Variant report
| Variant | rs12495477 |
|---|---|
| Chromosome Location | chr3:24666286-24666287 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:24653142..24655927-chr3:24664996..24667138,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11706529 | 0.86[ASN][1000 genomes] |
| rs11717800 | 0.86[ASN][1000 genomes] |
| rs12489628 | 0.85[ASN][1000 genomes] |
| rs12490060 | 0.86[ASN][1000 genomes] |
| rs12490340 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12493486 | 0.86[ASN][1000 genomes] |
| rs12497682 | 0.86[ASN][1000 genomes] |
| rs17014904 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs2362120 | 0.86[ASN][1000 genomes] |
| rs4131482 | 0.86[ASN][1000 genomes] |
| rs4383457 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56198624 | 0.86[ASN][1000 genomes] |
| rs56218990 | 0.86[ASN][1000 genomes] |
| rs57767662 | 0.86[ASN][1000 genomes] |
| rs58955391 | 0.86[ASN][1000 genomes] |
| rs59446401 | 0.86[ASN][1000 genomes] |
| rs61265833 | 0.86[ASN][1000 genomes] |
| rs73042404 | 0.86[ASN][1000 genomes] |
| rs73042405 | 0.86[ASN][1000 genomes] |
| rs73042407 | 0.83[ASN][1000 genomes] |
| rs73042423 | 0.86[ASN][1000 genomes] |
| rs73042429 | 0.86[ASN][1000 genomes] |
| rs73042432 | 0.86[ASN][1000 genomes] |
| rs73042435 | 0.86[ASN][1000 genomes] |
| rs73042441 | 0.86[ASN][1000 genomes] |
| rs73042453 | 0.86[ASN][1000 genomes] |
| rs73042455 | 0.86[ASN][1000 genomes] |
| rs73042456 | 0.86[ASN][1000 genomes] |
| rs7628178 | 0.86[ASN][1000 genomes] |
| rs9819978 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757862 | chr3:24652513-24942926 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2759135 | chr3:24652513-24942926 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv10254 | chr3:24661741-24666296 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24658800-24667000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr3:24663800-24666400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 3 | chr3:24666200-24667200 | Weak transcription | H9 Cell Line | embryonic stem cell |
