Variant report

Variant	rs11706529
Chromosome Location	chr3:24647705-24647706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24647511..24649066-chr3:24682804..24685271,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10490835	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10490837	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs11717800	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488765	0.89[CHB][hapmap];0.91[CHD][hapmap]
rs12489628	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490060	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490340	0.86[ASN][1000 genomes]
rs12493486	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495477	0.86[ASN][1000 genomes]
rs12497682	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196435	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2362120	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131482	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4383457	0.86[ASN][1000 genomes]
rs56198624	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218990	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57767662	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58955391	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59446401	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61265833	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73042404	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73042405	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73042407	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73042411	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73042415	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73042423	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73042429	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73042432	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73042435	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73042441	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73042453	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73042455	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73042456	0.96[ASN][1000 genomes]
rs73042457	0.85[AFR][1000 genomes]
rs7628178	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9819978	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11706529	ZNF385D	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24643800-24650200	Weak transcription	Aorta	Aorta
2	chr3:24644000-24648800	Weak transcription	NHDF-Ad	bronchial
3	chr3:24644200-24649400	Weak transcription	Adipose Nuclei	Adipose
4	chr3:24644400-24649600	Weak transcription	Fetal Lung	lung
5	chr3:24644800-24649600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:24645200-24648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:24646600-24648000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:24647000-24648000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:24647600-24647800	Enhancers	Brain Germinal Matrix	brain

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