Variant report

Variant	rs73042415
Chromosome Location	chr3:24666635-24666636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24653142..24655927-chr3:24664996..24667138,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11706529	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11717800	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12489628	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12490060	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12493486	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12497682	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2362120	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4131482	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56198624	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56218990	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57767662	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58955391	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59446401	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61265833	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73042404	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73042405	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73042407	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73042411	0.98[EUR][1000 genomes]
rs73042423	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73042429	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73042432	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73042435	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73042441	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73042453	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73042455	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73042457	0.86[EUR][1000 genomes]
rs7628178	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9819978	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24658800-24667000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24666200-24667200	Weak transcription	H9 Cell Line	embryonic stem cell

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