Variant report
Variant | rs73042457 |
---|---|
Chromosome Location | chr3:24705288-24705289 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000228791 | Chromatin interaction |
ENSG00000265028 | Chromatin interaction |
ENSG00000151090 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11706529 | 0.85[AFR][1000 genomes] |
rs11717800 | 0.86[EUR][1000 genomes] |
rs12489628 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs12490060 | 0.84[EUR][1000 genomes] |
rs12493486 | 0.84[EUR][1000 genomes] |
rs12497682 | 0.86[EUR][1000 genomes] |
rs2362120 | 0.82[EUR][1000 genomes] |
rs4131482 | 0.82[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs56198624 | 0.84[EUR][1000 genomes] |
rs56218990 | 0.84[EUR][1000 genomes] |
rs57767662 | 0.90[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs58955391 | 0.90[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs59446401 | 0.83[EUR][1000 genomes] |
rs61265833 | 0.90[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs73042404 | 0.83[EUR][1000 genomes] |
rs73042405 | 0.84[EUR][1000 genomes] |
rs73042407 | 0.84[EUR][1000 genomes] |
rs73042411 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs73042415 | 0.86[EUR][1000 genomes] |
rs73042423 | 0.86[EUR][1000 genomes] |
rs73042429 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs73042432 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs73042435 | 0.90[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs73042441 | 0.99[EUR][1000 genomes] |
rs73042453 | 0.99[EUR][1000 genomes] |
rs73042455 | 0.90[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs7628178 | 0.99[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757862 | chr3:24652513-24942926 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | esv2759135 | chr3:24652513-24942926 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1005314 | chr3:24690692-24813960 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv589950 | chr3:24694021-24816974 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:24704200-24726000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |