Variant report

Variant	rs73042456
Chromosome Location	chr3:24704362-24704363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11706529	0.96[ASN][1000 genomes]
rs11717800	1.00[ASN][1000 genomes]
rs12488765	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12489628	0.98[ASN][1000 genomes]
rs12490060	0.96[ASN][1000 genomes]
rs12490340	0.86[ASN][1000 genomes]
rs12493486	0.96[ASN][1000 genomes]
rs12495477	0.86[ASN][1000 genomes]
rs12497682	1.00[ASN][1000 genomes]
rs2362120	0.96[ASN][1000 genomes]
rs4131482	1.00[ASN][1000 genomes]
rs4383457	0.86[ASN][1000 genomes]
rs56198624	0.96[ASN][1000 genomes]
rs56218990	0.96[ASN][1000 genomes]
rs57767662	1.00[ASN][1000 genomes]
rs58955391	1.00[ASN][1000 genomes]
rs59446401	0.96[ASN][1000 genomes]
rs61265833	1.00[ASN][1000 genomes]
rs73042404	0.96[ASN][1000 genomes]
rs73042405	0.96[ASN][1000 genomes]
rs73042407	0.92[ASN][1000 genomes]
rs73042423	1.00[ASN][1000 genomes]
rs73042429	1.00[ASN][1000 genomes]
rs73042432	1.00[ASN][1000 genomes]
rs73042435	1.00[ASN][1000 genomes]
rs73042441	1.00[ASN][1000 genomes]
rs73042453	1.00[ASN][1000 genomes]
rs73042455	1.00[ASN][1000 genomes]
rs7628178	1.00[ASN][1000 genomes]
rs9819978	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv589950	chr3:24694021-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24703000-24704800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:24703200-24704400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:24703800-24705000	Enhancers	Stomach Mucosa	stomach
4	chr3:24703800-24705200	Enhancers	Gastric	stomach
5	chr3:24704000-24704600	Enhancers	Pancreas	Pancrea
6	chr3:24704200-24726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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