Variant report

Variant	rs12497836
Chromosome Location	chr3:110031200-110031201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12487021	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13315757	0.89[ASN][1000 genomes]
rs1585519	0.96[ASN][1000 genomes]
rs2399307	0.96[ASN][1000 genomes]
rs2399308	0.95[ASN][1000 genomes]
rs2399309	0.95[ASN][1000 genomes]
rs2399310	0.96[ASN][1000 genomes]
rs2399313	0.96[ASN][1000 genomes]
rs2399320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614677	0.95[ASN][1000 genomes]
rs2614681	0.95[ASN][1000 genomes]
rs2614682	0.96[ASN][1000 genomes]
rs2712983	0.92[ASN][1000 genomes]
rs2712984	0.92[ASN][1000 genomes]
rs2712986	0.92[ASN][1000 genomes]
rs2712987	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2712988	0.95[ASN][1000 genomes]
rs2712990	0.95[ASN][1000 genomes]
rs4381975	0.96[ASN][1000 genomes]
rs6437907	0.95[ASN][1000 genomes]
rs6763926	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6763952	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6781863	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782152	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782321	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783465	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6788482	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6795445	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802410	0.95[ASN][1000 genomes]
rs72933265	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72940983	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72940993	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73851475	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73851479	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7614528	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7636367	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7640823	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9815529	0.84[ASN][1000 genomes]
rs9817325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818820	0.89[ASN][1000 genomes]
rs9823594	0.96[ASN][1000 genomes]
rs9832551	0.88[ASN][1000 genomes]
rs9855559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869023	0.93[ASN][1000 genomes]
rs9870012	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9873463	0.84[ASN][1000 genomes]
rs9875818	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877335	chr3:109986271-110061676	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110029000-110031400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:110030400-110031200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:110030400-110031400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:110030800-110033200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links