Variant report

Variant	rs9823594
Chromosome Location	chr3:110064706-110064707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110059725..110061588-chr3:110063064..110065714,2	K562	blood:
2	chr3:110064640..110067348-chr3:110084597..110086905,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12487021	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497836	0.96[ASN][1000 genomes]
rs13315757	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1585519	0.92[ASN][1000 genomes]
rs2399307	0.92[ASN][1000 genomes]
rs2399308	0.92[ASN][1000 genomes]
rs2399309	0.92[ASN][1000 genomes]
rs2399310	0.92[ASN][1000 genomes]
rs2399313	0.92[ASN][1000 genomes]
rs2399320	0.96[ASN][1000 genomes]
rs2399321	0.96[ASN][1000 genomes]
rs2614677	0.92[ASN][1000 genomes]
rs2614681	0.92[ASN][1000 genomes]
rs2614682	0.92[ASN][1000 genomes]
rs2712983	0.88[ASN][1000 genomes]
rs2712984	0.88[ASN][1000 genomes]
rs2712986	0.88[ASN][1000 genomes]
rs2712987	0.92[ASN][1000 genomes]
rs2712988	0.92[ASN][1000 genomes]
rs2712990	0.92[ASN][1000 genomes]
rs4381975	0.92[ASN][1000 genomes]
rs6437907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763926	0.92[ASN][1000 genomes]
rs6763952	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781863	0.96[ASN][1000 genomes]
rs6782152	0.96[ASN][1000 genomes]
rs6782321	0.96[ASN][1000 genomes]
rs6782955	0.96[ASN][1000 genomes]
rs6783410	0.96[ASN][1000 genomes]
rs6783465	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788482	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6795445	0.96[ASN][1000 genomes]
rs6802410	0.92[ASN][1000 genomes]
rs72933265	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72940983	0.96[ASN][1000 genomes]
rs72940993	0.95[ASN][1000 genomes]
rs73851475	0.96[ASN][1000 genomes]
rs73851479	0.95[ASN][1000 genomes]
rs7614528	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636367	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640823	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815529	0.88[ASN][1000 genomes]
rs9817325	0.96[ASN][1000 genomes]
rs9818820	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832551	0.84[ASN][1000 genomes]
rs9855559	0.96[ASN][1000 genomes]
rs9869023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9870012	0.92[ASN][1000 genomes]
rs9873463	0.88[ASN][1000 genomes]
rs9875818	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110062200-110064800	Enhancers	Fetal Intestine Small	intestine
2	chr3:110062200-110064800	Flanking Active TSS	A549	lung
3	chr3:110063800-110065000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:110063800-110071400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:110064400-110064800	Enhancers	Liver	Liver
6	chr3:110064400-110065400	Enhancers	HepG2	liver
7	chr3:110064400-110071000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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