Variant report

Variant	rs2399309
Chromosome Location	chr3:110015383-110015384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11707827	0.98[EUR][1000 genomes]
rs11713100	0.98[EUR][1000 genomes]
rs11713805	0.98[EUR][1000 genomes]
rs12487021	0.92[ASN][1000 genomes]
rs12497836	0.95[ASN][1000 genomes]
rs12639192	0.95[EUR][1000 genomes]
rs13067568	0.98[EUR][1000 genomes]
rs13086848	0.98[EUR][1000 genomes]
rs13087004	0.98[EUR][1000 genomes]
rs13087052	0.98[EUR][1000 genomes]
rs13315757	0.84[ASN][1000 genomes]
rs1585519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1585520	0.98[EUR][1000 genomes]
rs2399307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2399308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2399313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2399320	0.95[ASN][1000 genomes]
rs2399321	0.95[ASN][1000 genomes]
rs2614677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614680	0.98[EUR][1000 genomes]
rs2614681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712983	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2712984	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2712986	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2712987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871943	0.91[EUR][1000 genomes]
rs4381975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6437907	0.91[ASN][1000 genomes]
rs6763926	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763952	0.92[ASN][1000 genomes]
rs6781863	0.95[ASN][1000 genomes]
rs6782152	0.95[ASN][1000 genomes]
rs6782321	0.95[ASN][1000 genomes]
rs6782955	0.95[ASN][1000 genomes]
rs6783410	0.95[ASN][1000 genomes]
rs6783465	0.92[ASN][1000 genomes]
rs6788482	0.92[ASN][1000 genomes]
rs6795445	0.95[ASN][1000 genomes]
rs6802410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933265	0.92[ASN][1000 genomes]
rs72940983	0.95[ASN][1000 genomes]
rs72940993	0.96[ASN][1000 genomes]
rs73851475	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73851479	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7614528	0.92[ASN][1000 genomes]
rs7636367	0.92[ASN][1000 genomes]
rs7637078	0.98[EUR][1000 genomes]
rs7640823	0.92[ASN][1000 genomes]
rs9817325	0.95[ASN][1000 genomes]
rs9818820	0.84[ASN][1000 genomes]
rs9823594	0.92[ASN][1000 genomes]
rs9832551	0.83[ASN][1000 genomes]
rs9855559	0.95[ASN][1000 genomes]
rs9869023	0.94[ASN][1000 genomes]
rs9870012	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875818	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877335	chr3:109986271-110061676	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110014800-110019400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:110015200-110015800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:110015200-110016000	Enhancers	HSMM	muscle

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