Variant report

Variant	rs12499964
Chromosome Location	chr4:78336196-78336197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12504012	0.95[ASN][1000 genomes]
rs12644845	0.95[ASN][1000 genomes]
rs12644936	0.95[ASN][1000 genomes]
rs12647991	0.95[ASN][1000 genomes]
rs12648073	0.95[ASN][1000 genomes]
rs12649862	0.95[ASN][1000 genomes]
rs13119926	0.91[ASN][1000 genomes]
rs34938732	0.91[ASN][1000 genomes]
rs41476645	0.95[ASN][1000 genomes]
rs62302386	0.97[ASN][1000 genomes]
rs6841674	0.92[ASN][1000 genomes]
rs71609310	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12499964	TKTL2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78334200-78336200	Enhancers	Fetal Stomach	stomach
2	chr4:78335800-78336200	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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