Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78287359..78291622-chr4:78351702..78357008,5	MCF-7	breast:
2	chr4:78306279..78307489-chr4:78353325..78355121,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNG2-1	chr4:78353394-78353534	NONHSAT097050

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10518177	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12499964	0.85[ASN][1000 genomes]
rs12501028	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12504012	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12504958	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12508391	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12508421	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12644845	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644936	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645380	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12647991	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12648073	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12649862	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13119926	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34649706	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34938732	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41476645	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62302386	0.87[ASN][1000 genomes]
rs67607644	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6841674	0.81[ASN][1000 genomes]
rs7689830	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78343600-78353600	Weak transcription	Aorta	Aorta
2	chr4:78352200-78354600	Enhancers	Psoas Muscle	Psoas
3	chr4:78352200-78354600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:78352200-78354800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:78352200-78356200	Enhancers	Fetal Muscle Leg	muscle
6	chr4:78352400-78356400	Enhancers	HSMMtube	muscle
7	chr4:78353400-78353600	Enhancers	Spleen	Spleen

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