Variant report

Variant	rs12645380
Chromosome Location	chr4:78401826-78401827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10518177	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12501028	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12504012	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12504958	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12508391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12508421	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12644845	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12644936	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12647991	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12648073	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12649862	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13119926	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1442693	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs34649706	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34938732	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41476645	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67607644	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71609310	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7689830	0.86[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78398600-78402400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:78400800-78402200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:78401800-78404400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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