Variant report
| Variant | rs34938732 |
|---|---|
| Chromosome Location | chr4:78345863-78345864 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:78338803..78341194-chr4:78343651..78346166,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10518177 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12499964 | 0.91[ASN][1000 genomes] |
| rs12501028 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12504012 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12504958 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12508391 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12508421 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12644845 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12644936 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12645380 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12647991 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12648073 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12649862 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13119926 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34649706 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs41476645 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62302386 | 0.94[ASN][1000 genomes] |
| rs67607644 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6841674 | 0.87[ASN][1000 genomes] |
| rs71609310 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7689830 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:78343600-78353600 | Weak transcription | Aorta | Aorta |
