Variant report

Variant	rs12507854
Chromosome Location	chr4:175572724-175572725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175572610..175575393-chr4:175581284..175583199,3	K562	blood:
2	chr4:175562905..175565891-chr4:175571814..175574262,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10007816	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10013091	0.84[ASN][1000 genomes]
rs10013630	0.94[CHB][hapmap]
rs10018305	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10018936	0.85[ASN][1000 genomes]
rs10019298	0.85[ASN][1000 genomes]
rs10021195	0.85[ASN][1000 genomes]
rs10023554	0.98[ASN][1000 genomes]
rs10025809	0.84[ASN][1000 genomes]
rs12498212	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12502221	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12508934	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12509016	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12511536	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12643679	0.84[ASN][1000 genomes]
rs13140642	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13143821	0.85[ASN][1000 genomes]
rs4128165	0.95[CHB][hapmap]
rs4132374	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4235212	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4334734	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs4362800	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4365704	0.85[ASN][1000 genomes]
rs4368581	0.85[ASN][1000 genomes]
rs4425356	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4479681	0.85[CHB][hapmap]
rs4622971	0.95[CHB][hapmap]
rs4695779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4695780	0.84[ASN][1000 genomes]
rs4695781	0.84[ASN][1000 genomes]
rs4695938	0.95[CHB][hapmap]
rs4695939	0.95[CHB][hapmap]
rs4695940	0.98[ASN][1000 genomes]
rs4695941	0.84[ASN][1000 genomes]
rs4695942	0.84[ASN][1000 genomes]
rs4695943	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4695946	0.84[ASN][1000 genomes]
rs4695947	0.84[ASN][1000 genomes]
rs6820480	0.86[ASN][1000 genomes]
rs6838325	0.84[ASN][1000 genomes]
rs6849847	0.95[CHB][hapmap]
rs7682005	0.84[ASN][1000 genomes]
rs7686653	0.84[ASN][1000 genomes]
rs7698893	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9992074	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175571800-175573200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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