Variant report
| Variant | rs12509016 |
|---|---|
| Chromosome Location | chr4:175580077-175580078 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:175576888..175581364-chr4:175581452..175587240,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10007816 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10018305 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10018936 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10019298 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10021195 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10023554 | 0.84[ASN][1000 genomes] |
| rs12498212 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12502221 | 0.85[ASN][1000 genomes] |
| rs12507854 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12508934 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12511536 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12643679 | 0.99[ASN][1000 genomes] |
| rs13140642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13143821 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4362800 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4365704 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4368581 | 0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4377566 | 0.83[ASN][1000 genomes] |
| rs4425356 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4695779 | 0.85[ASN][1000 genomes] |
| rs4695940 | 0.84[ASN][1000 genomes] |
| rs6820480 | 1.00[ASN][1000 genomes] |
| rs9992074 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018390 | chr4:175475505-175969742 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv880584 | chr4:175505749-175644689 | Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:175579000-175580400 | Enhancers | K562 | blood |
