Variant report

Variant	rs12525363
Chromosome Location	chr6:36958733-36958734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:36958700-36958850	GM12875	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36905749..36908241-chr6:36957017..36958838,2	K562	blood:
2	chr6:36953848..36955845-chr6:36958288..36960298,2	K562	blood:

Variant related genes	Relation type
MTCH1	TF binding region
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12523725	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12524747	0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13193265	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1554721	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16889364	0.81[CHB][hapmap]
rs4711477	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4711478	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714028	0.81[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4714030	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714031	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[EUR][1000 genomes]
rs62406531	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915207	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs6919808	0.85[ASN][1000 genomes]
rs708008	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs708010	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7739340	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7744277	0.88[ASN][1000 genomes]
rs7762333	0.80[ASN][1000 genomes]
rs831380	0.95[CHB][hapmap]
rs831477	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5263	chr6:36941625-36972109	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36955200-36959200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36955400-36965200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:36955400-36965400	Weak transcription	Right Atrium	heart

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