Variant report

Variant	rs12525800
Chromosome Location	chr6:12035329-12035330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11771369..11773574-chr6:12033806..12036674,2	MCF-7	breast:
2	chr6:12034336..12036459-chr6:12037045..12039033,2	MCF-7	breast:
3	chr6:12029801..12032269-chr6:12032604..12035769,3	MCF-7	breast:
4	chr6:12010741..12013638-chr6:12032864..12036140,5	MCF-7	breast:
5	chr6:12033628..12035802-chr6:12038065..12040116,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12530006	0.84[ASW][hapmap];0.94[CHD][hapmap]
rs13196360	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13213752	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1409286	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1475357	0.85[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475358	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570987	1.00[YRI][hapmap]
rs17676598	0.84[ASW][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17765290	0.86[ASW][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2148254	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2327506	0.86[ASW][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4714081	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714115	0.89[AFR][1000 genomes]
rs4714116	0.93[AFR][1000 genomes]
rs4714119	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6938400	0.84[CHD][hapmap]
rs9462364	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9462377	0.86[ASW][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12525800	HIVEP1	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
2	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
5	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
8	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial
12	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:12029800-12042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:12030600-12037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:12030600-12037400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:12031400-12037200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:12031600-12037000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:12032000-12039800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:12032000-12044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:12032000-12044800	Weak transcription	NH-A	brain
21	chr6:12032000-12047600	Weak transcription	Fetal Stomach	stomach
22	chr6:12032200-12038000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:12032200-12039600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:12032200-12039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:12032200-12039800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:12032800-12035400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:12033000-12035400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:12033000-12035400	Enhancers	Liver	Liver
29	chr6:12033200-12035400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:12033200-12035600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:12033200-12035600	Enhancers	Fetal Heart	heart
32	chr6:12033200-12035800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:12033200-12036400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:12033200-12038000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:12033400-12035400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:12033600-12035400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:12033600-12040000	Enhancers	Primary T cells from cord blood	blood
38	chr6:12033800-12035400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:12033800-12035600	Enhancers	HMEC	breast
40	chr6:12033800-12037400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:12034000-12035400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:12034000-12035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:12034200-12035400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:12034200-12035400	Enhancers	Colon Smooth Muscle	Colon
45	chr6:12034200-12035400	Enhancers	Fetal Lung	lung
46	chr6:12034200-12035400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:12034200-12035600	Enhancers	Fetal Brain Female	brain
48	chr6:12034200-12037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:12034400-12035400	Enhancers	HSMMtube	muscle
50	chr6:12034400-12039200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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