Variant report

Variant	rs12530006
Chromosome Location	chr6:11976776-11976777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11975763..11978241-chr6:12007588..12010164,2	MCF-7	breast:
3	chr6:11972074..11974829-chr6:11976477..11980187,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12525800	0.84[ASW][hapmap];0.94[CHD][hapmap]
rs13213752	0.81[ASN][1000 genomes]
rs13216585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13362603	0.88[YRI][hapmap]
rs1475357	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs1475358	0.87[ASN][1000 genomes]
rs17676598	1.00[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2148254	0.85[ASN][1000 genomes]
rs2327509	0.89[YRI][hapmap]
rs4714081	0.87[ASN][1000 genomes]
rs6938400	0.85[CEU][hapmap];0.89[CHD][hapmap];0.83[MEX][hapmap]
rs765392	0.80[YRI][hapmap]
rs9462364	0.85[ASN][1000 genomes]
rs9462377	1.00[YRI][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11975000-11976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:11975000-11977200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:11975200-11977000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:11975200-11978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:11975200-11978400	Weak transcription	Hela-S3	cervix
7	chr6:11975400-11977000	Enhancers	Primary B cells from cord blood	blood
8	chr6:11975400-11977000	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11975400-11977000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:11975400-11977200	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:11975400-11978600	Weak transcription	NH-A	brain
12	chr6:11975600-11977000	Enhancers	Fetal Thymus	thymus
13	chr6:11975800-11976800	Enhancers	Primary T cells from cord blood	blood
14	chr6:11975800-11976800	Enhancers	Thymus	Thymus
15	chr6:11975800-11976800	Enhancers	NHEK	skin
16	chr6:11975800-11977000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:11975800-11977000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:11975800-11977400	Enhancers	GM12878-XiMat	blood
19	chr6:11975800-11979200	Enhancers	K562	blood
20	chr6:11976000-11976800	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:11976000-11977000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:11976000-11977000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:11976400-11977000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:11976400-11977800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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