Variant report

Variant	rs6938400
Chromosome Location	chr6:11919414-11919415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
3	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
4	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
5	chr6:11918788..11920525-chr6:12013699..12015737,2	K562	blood:
6	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP1-6	chr6:11919062-11919467	NONHSAT107769

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10947653	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12525800	0.84[CHD][hapmap]
rs12530006	0.85[CEU][hapmap];0.89[CHD][hapmap];0.83[MEX][hapmap]
rs17676598	0.83[CHD][hapmap];0.83[MEX][hapmap]
rs6907250	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
2	chr6:11918000-11919600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:11918000-11919600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:11918000-11919800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:11918000-11919800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:11918000-11919800	Enhancers	Fetal Intestine Large	intestine
7	chr6:11918000-11919800	Enhancers	Fetal Muscle Leg	muscle
8	chr6:11918000-11919800	Enhancers	HSMM	muscle
9	chr6:11918000-11919800	Enhancers	Osteobl	bone
10	chr6:11918000-11920200	Enhancers	Fetal Stomach	stomach
11	chr6:11918000-11920200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:11918200-11919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:11918200-11919800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:11918200-11919800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:11918200-11919800	Enhancers	Ovary	ovary
17	chr6:11918200-11919800	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:11918200-11919800	Flanking Active TSS	K562	blood
19	chr6:11918200-11919800	Enhancers	NH-A	brain
20	chr6:11918200-11920000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:11918200-11920200	Enhancers	Fetal Lung	lung
22	chr6:11918200-11920600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
28	chr6:11918400-11919600	Enhancers	Brain Hippocampus Middle	brain
29	chr6:11918400-11919600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:11918400-11919800	Enhancers	Brain Germinal Matrix	brain
31	chr6:11918400-11922400	Enhancers	NHEK	skin
32	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:11918600-11919600	Enhancers	Fetal Brain Male	brain
34	chr6:11918600-11920600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:11918600-11921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:11919000-11921200	Weak transcription	Small Intestine	intestine
37	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:11919200-11920400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:11919200-11920400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:11919200-11920400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:11919400-11920600	Weak transcription	Placenta	Placenta
42	chr6:11919400-11920600	Weak transcription	A549	lung
43	chr6:11919400-11920800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:11919400-11921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:11919400-11921200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:11919400-11921200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:11919400-11921200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:11919400-11921200	Weak transcription	Right Ventricle	heart
49	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:11919400-11922200	Enhancers	Hela-S3	cervix

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