Variant report

Variant	rs12525914
Chromosome Location	chr6:13175908-13175909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10948524	0.95[CEU][hapmap]
rs11757278	0.95[CEU][hapmap]
rs12527257	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12528399	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869294	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs16873682	0.95[CEU][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3778646	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3823445	0.95[CEU][hapmap];0.81[AMR][1000 genomes]
rs4097413	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4715132	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs62385532	0.86[EUR][1000 genomes]
rs9349494	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9357620	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9367368	0.95[CEU][hapmap]
rs9381807	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9381809	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9381810	0.96[CEU][hapmap]
rs9381812	1.00[CEU][hapmap]
rs9395497	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9395520	0.96[CEU][hapmap]
rs9463511	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
5	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:13159600-13178400	Weak transcription	Right Ventricle	heart
7	chr6:13160000-13177400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
11	chr6:13166600-13177800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:13172400-13176200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:13172400-13176600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:13172400-13176600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:13172600-13176800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:13173600-13176800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:13174600-13180400	Weak transcription	Fetal Brain Female	brain
19	chr6:13174800-13177800	Weak transcription	Brain Anterior Caudate	brain
20	chr6:13175400-13176400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:13175400-13176600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:13175400-13176800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:13175600-13176200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:13175600-13176200	Enhancers	Fetal Heart	heart
25	chr6:13175600-13176400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:13175600-13176400	Enhancers	Lung	lung
27	chr6:13175600-13176800	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:13175600-13176800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:13175600-13177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:13175800-13176200	Weak transcription	Left Ventricle	heart

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