Variant report

Variant	rs9463511
Chromosome Location	chr6:13178259-13178260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr6:13177838-13178395	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PHACTR1	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10948524	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11757278	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs12525914	0.96[CEU][hapmap]
rs12527257	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12528399	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16869294	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs16873653	0.92[YRI][hapmap]
rs16873682	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3778646	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3823445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3864309	0.84[EUR][1000 genomes]
rs3864310	0.81[EUR][1000 genomes]
rs4097413	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4715132	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs62385532	0.92[EUR][1000 genomes]
rs6916503	0.92[YRI][hapmap]
rs6917942	0.92[YRI][hapmap]
rs6923461	0.92[YRI][hapmap]
rs6930563	0.92[YRI][hapmap]
rs6932796	0.92[YRI][hapmap]
rs9349494	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9349501	0.88[EUR][1000 genomes]
rs9349502	0.88[EUR][1000 genomes]
rs9357620	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs9357634	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9367368	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9367369	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369915	0.87[EUR][1000 genomes]
rs9369916	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369917	0.88[EUR][1000 genomes]
rs9381807	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9381809	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9381810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381818	0.88[EUR][1000 genomes]
rs9381819	0.88[EUR][1000 genomes]
rs9395497	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs9395520	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs9463487	0.96[YRI][hapmap]
rs9463488	0.92[YRI][hapmap]
rs9463490	0.96[YRI][hapmap]
rs9463495	0.92[YRI][hapmap]
rs9463496	0.92[YRI][hapmap]
rs9473562	0.92[YRI][hapmap]
rs9473569	0.92[YRI][hapmap]
rs9473572	0.96[YRI][hapmap]
rs9473575	0.92[YRI][hapmap]
rs9473576	0.92[YRI][hapmap]
rs9473577	0.91[YRI][hapmap]
rs9473580	0.96[YRI][hapmap]
rs9473587	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
2	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13159600-13178400	Weak transcription	Right Ventricle	heart
4	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
7	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:13174600-13180400	Weak transcription	Fetal Brain Female	brain
9	chr6:13176400-13178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:13176400-13183800	Weak transcription	Lung	lung
11	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:13176600-13181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13177400-13179200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:13177800-13178400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:13177800-13178400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:13177800-13178400	Enhancers	Brain Anterior Caudate	brain
17	chr6:13177800-13178600	Enhancers	Fetal Heart	heart
18	chr6:13177800-13178800	Enhancers	Left Ventricle	heart
19	chr6:13177800-13179200	Enhancers	Brain Hippocampus Middle	brain
20	chr6:13178000-13178400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:13178000-13178800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr6:13178000-13179200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:13178000-13179200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:13178200-13178400	Enhancers	Brain Germinal Matrix	brain
25	chr6:13178200-13178400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:13178200-13178600	Enhancers	Brain Angular Gyrus	brain
27	chr6:13178200-13178800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:13178200-13178800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:13178200-13178800	Enhancers	Spleen	Spleen
30	chr6:13178200-13179000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:13178200-13179000	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:13178200-13179000	Enhancers	Brain Substantia Nigra	brain
33	chr6:13178200-13179800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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