Variant report

Variant	rs12529563
Chromosome Location	chr6:143875758-143875759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143856385..143859400-chr6:143873221..143878065,7	MCF-7	breast:
2	chr6:143866196..143871091-chr6:143873413..143876633,4	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143875462-143876367	ENSG00000235740.1
2	lnc-FUCA2-1	chr6:143875373-143876367	NONHSAT115359
3	lnc-FUCA2-1	chr6:143875252-143876367	NR_027114
4	lnc-FUCA2-1	chr6:143875252-143876367	NR_027113
5	lnc-FUCA2-1	chr6:143875252-143876367	NR_110148
6	lnc-FUCA2-1	chr6:143875252-143876367	NR_110149
7	lnc-FUCA2-1	chr6:143875467-143876367	NONHSAT115361

No data

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13194847	0.83[CEU][hapmap]
rs3762003	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs867461	0.84[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12529563	HIVEP2	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:143865800-143876000	Weak transcription	Fetal Heart	heart
4	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:143867200-143875800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:143867400-143876000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:143867600-143876000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:143868200-143883600	Weak transcription	Gastric	stomach
9	chr6:143870400-143877000	Enhancers	Fetal Intestine Small	intestine
10	chr6:143871000-143879000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:143871200-143875800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:143871200-143875800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:143871200-143875800	Weak transcription	HMEC	breast
14	chr6:143871200-143876200	Weak transcription	HSMM	muscle
15	chr6:143871400-143875800	Weak transcription	NHEK	skin
16	chr6:143871400-143876000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143871600-143875800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:143871600-143876000	Weak transcription	GM12878-XiMat	blood
19	chr6:143872200-143876000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:143872600-143875800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:143874000-143875800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:143874000-143876000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr6:143874200-143875800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:143874200-143876000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:143874200-143876000	Enhancers	K562	blood
26	chr6:143874200-143877600	Enhancers	Fetal Intestine Large	intestine
27	chr6:143874600-143875800	Enhancers	Primary T cells from cord blood	blood
28	chr6:143874600-143876000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr6:143874600-143876400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:143875400-143877600	Enhancers	Fetal Thymus	thymus
32	chr6:143875400-143878200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:143875600-143875800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:143875600-143875800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:143875600-143875800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:143875600-143875800	Enhancers	Left Ventricle	heart
37	chr6:143875600-143876000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr6:143875600-143876200	Enhancers	Fetal Kidney	kidney
39	chr6:143875600-143876600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:143875600-143876800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr6:143875600-143876800	Enhancers	Thymus	Thymus
42	chr6:143875600-143876800	Enhancers	HUVEC	blood vessel
43	chr6:143875600-143877000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:143875600-143877000	Enhancers	Small Intestine	intestine
45	chr6:143875600-143877000	Enhancers	Stomach Mucosa	stomach
46	chr6:143875600-143877000	Enhancers	HepG2	liver

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