Variant report

Variant	rs13194847
Chromosome Location	chr6:143891396-143891397
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143832462..143834388-chr6:143888841..143891719,2	MCF-7	breast:
2	chr6:143880018..143883836-chr6:143889367..143892102,3	K562	blood:
3	chr6:143880018..143882348-chr6:143889752..143892102,2	K562	blood:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000235740	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1054752	0.93[ASN][1000 genomes]
rs10979	0.82[CHB][hapmap];0.91[CHD][hapmap];0.93[ASN][1000 genomes]
rs11155300	0.91[ASN][1000 genomes]
rs1133477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961814	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11961857	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961870	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961908	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961927	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11965970	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970288	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970358	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970446	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12176035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191231	0.93[ASN][1000 genomes]
rs12191837	0.91[ASN][1000 genomes]
rs12203151	0.90[ASN][1000 genomes]
rs12208649	0.91[ASN][1000 genomes]
rs12211659	0.91[ASN][1000 genomes]
rs12212011	0.91[ASN][1000 genomes]
rs12215667	0.91[ASN][1000 genomes]
rs12525607	0.90[ASN][1000 genomes]
rs12526234	0.88[ASN][1000 genomes]
rs12529563	0.83[CEU][hapmap]
rs12738	0.93[ASN][1000 genomes]
rs13196809	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13197332	0.93[ASN][1000 genomes]
rs13198159	0.93[ASN][1000 genomes]
rs13200147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13200325	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13203973	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13211390	0.93[ASN][1000 genomes]
rs13212626	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13216148	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416205	0.93[ASN][1000 genomes]
rs1416206	0.93[ASN][1000 genomes]
rs1416207	0.93[ASN][1000 genomes]
rs28479556	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34068572	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34158186	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34199303	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34320641	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34373782	0.93[ASN][1000 genomes]
rs34703787	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34960207	0.89[ASN][1000 genomes]
rs34973979	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35205240	0.88[ASN][1000 genomes]
rs35317420	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35354710	0.87[ASN][1000 genomes]
rs35705085	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35826562	0.88[ASN][1000 genomes]
rs35971628	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3748072	0.82[CHB][hapmap];0.93[ASN][1000 genomes]
rs3762003	0.83[CEU][hapmap]
rs4142501	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55662387	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55998335	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56260812	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570565	0.83[ASN][1000 genomes]
rs6570566	0.83[ASN][1000 genomes]
rs66648313	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6905264	0.91[ASN][1000 genomes]
rs6907272	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6924422	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6924719	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6924940	0.83[ASN][1000 genomes]
rs6924967	0.83[ASN][1000 genomes]
rs6927128	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753967	0.93[ASN][1000 genomes]
rs7754452	0.93[ASN][1000 genomes]
rs7774139	0.80[ASN][1000 genomes]
rs7774497	0.93[ASN][1000 genomes]
rs9285500	0.91[ASN][1000 genomes]
rs9321922	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs9321923	0.91[ASN][1000 genomes]
rs9373394	0.93[ASN][1000 genomes]
rs9376756	0.91[CHD][hapmap];0.89[ASN][1000 genomes]
rs9376757	0.87[ASN][1000 genomes]
rs9376758	0.90[ASN][1000 genomes]
rs9376759	0.87[ASN][1000 genomes]
rs9376760	0.87[ASN][1000 genomes]
rs9376761	0.93[ASN][1000 genomes]
rs9376762	0.93[ASN][1000 genomes]
rs9376763	0.93[ASN][1000 genomes]
rs9376764	0.93[ASN][1000 genomes]
rs9376765	0.85[ASN][1000 genomes]
rs9386032	0.93[ASN][1000 genomes]
rs9386033	0.93[ASN][1000 genomes]
rs9386035	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386036	0.93[ASN][1000 genomes]
rs9386037	0.93[ASN][1000 genomes]
rs9386038	0.81[CHB][hapmap];0.91[ASN][1000 genomes]
rs9390104	0.93[ASN][1000 genomes]
rs9390106	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390109	0.91[ASN][1000 genomes]
rs9390110	0.91[ASN][1000 genomes]
rs9390111	0.90[ASN][1000 genomes]
rs9390112	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs9390113	0.91[ASN][1000 genomes]
rs9399447	0.81[CHB][hapmap];0.91[ASN][1000 genomes]
rs9399448	0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs9403504	0.90[ASN][1000 genomes]
rs9403505	0.91[CHD][hapmap];0.90[ASN][1000 genomes]
rs9403506	0.93[ASN][1000 genomes]
rs9403507	0.82[CHB][hapmap];0.85[CHD][hapmap];0.93[ASN][1000 genomes]
rs9403508	0.93[ASN][1000 genomes]
rs9403509	0.93[ASN][1000 genomes]
rs9403511	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403512	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9484766	0.83[ASN][1000 genomes]
rs9484767	0.93[ASN][1000 genomes]
rs9484768	0.93[ASN][1000 genomes]
rs9484769	0.91[ASN][1000 genomes]
rs9484770	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs9484771	0.82[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs9484772	0.86[ASN][1000 genomes]
rs9484773	0.91[ASN][1000 genomes]
rs9496671	0.91[CHD][hapmap];0.90[ASN][1000 genomes]
rs9496673	0.83[ASN][1000 genomes]
rs9496674	0.89[ASN][1000 genomes]
rs9496676	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs9496678	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9496679	0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs9496681	0.81[CHB][hapmap];0.91[ASN][1000 genomes]
rs9496682	0.84[ASN][1000 genomes]
rs9496683	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13194847	SF3B5	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:143890000-143891800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:143890000-143891800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:143890400-143891400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:143890600-143891600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:143890800-143891400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:143890800-143896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:143891000-143891400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:143891000-143891600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:143891000-143895200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:143891200-143891400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:143891200-143891400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:143891200-143892000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:143891200-143892000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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