Variant report

Variant	rs3762003
Chromosome Location	chr6:143876124-143876125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143856385..143859400-chr6:143873221..143878065,7	MCF-7	breast:
2	chr6:143825880..143828430-chr6:143875843..143877779,2	K562	blood:
3	chr6:143866196..143871091-chr6:143873413..143876633,4	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143875462-143876367	ENSG00000235740.1
2	lnc-FUCA2-1	chr6:143875921-143876370	NONHSAT115358
3	lnc-FUCA2-1	chr6:143875373-143876367	NONHSAT115359
4	lnc-FUCA2-1	chr6:143875252-143876367	NR_027114
5	lnc-FUCA2-1	chr6:143875252-143876367	NR_027113
6	lnc-FUCA2-1	chr6:143875252-143876367	NR_110148
7	lnc-FUCA2-1	chr6:143875252-143876367	NR_110149
8	lnc-FUCA2-1	chr6:143875467-143876367	NONHSAT115361

No data

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction
ENSG00000229036	Chromatin interaction

rs_ID	r²[population]
rs12529563	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13194847	0.83[CEU][hapmap]
rs867461	0.84[AFR][1000 genomes]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:143868200-143883600	Weak transcription	Gastric	stomach
4	chr6:143870400-143877000	Enhancers	Fetal Intestine Small	intestine
5	chr6:143871000-143879000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:143871200-143876200	Weak transcription	HSMM	muscle
7	chr6:143874200-143877600	Enhancers	Fetal Intestine Large	intestine
8	chr6:143874600-143876400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:143875400-143877600	Enhancers	Fetal Thymus	thymus
11	chr6:143875400-143878200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:143875600-143876200	Enhancers	Fetal Kidney	kidney
13	chr6:143875600-143876600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:143875600-143876800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr6:143875600-143876800	Enhancers	Thymus	Thymus
16	chr6:143875600-143876800	Enhancers	HUVEC	blood vessel
17	chr6:143875600-143877000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143875600-143877000	Enhancers	Small Intestine	intestine
19	chr6:143875600-143877000	Enhancers	Stomach Mucosa	stomach
20	chr6:143875600-143877000	Enhancers	HepG2	liver
21	chr6:143875800-143876200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:143875800-143876200	Enhancers	NH-A	brain
23	chr6:143875800-143876400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:143875800-143876600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:143875800-143876600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr6:143875800-143876600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:143875800-143876600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:143875800-143876600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:143875800-143876800	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr6:143875800-143876800	Enhancers	NHEK	skin
31	chr6:143875800-143877000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:143875800-143877000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:143875800-143877000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:143875800-143877600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:143875800-143882600	Weak transcription	Left Ventricle	heart
36	chr6:143876000-143876200	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:143876000-143876200	Enhancers	Osteobl	bone
38	chr6:143876000-143876400	Active TSS	Primary T cells fromperipheralblood	blood
39	chr6:143876000-143876400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:143876000-143876400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:143876000-143876400	Flanking Active TSS	HMEC	breast
42	chr6:143876000-143876600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr6:143876000-143876600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr6:143876000-143876600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr6:143876000-143876600	Enhancers	GM12878-XiMat	blood
46	chr6:143876000-143876600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr6:143876000-143876800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:143876000-143876800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:143876000-143876800	Enhancers	Fetal Heart	heart
50	chr6:143876000-143876800	Flanking Active TSS	K562	blood

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