Variant report

Variant	rs13197332
Chromosome Location	chr6:143888095-143888096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:143887993-143888521	GM12878	blood:	n/a	n/a
2	PAX5	chr6:143887934-143888513	GM12878	blood:	n/a	chr6:143888268-143888277
3	YY1	chr6:143888040-143888455	GM12891	blood:	n/a	n/a
4	POLR2A	chr6:143888029-143888459	GM12892	blood:	n/a	n/a
5	POLR2A	chr6:143887982-143888485	GM12892	blood:	n/a	n/a
6	MAZ	chr6:143887843-143888504	GM12878	blood:	n/a	n/a
7	EP300	chr6:143888078-143888485	GM12878	blood:	n/a	chr6:143888268-143888282 chr6:143888125-143888134
8	FOXM1	chr6:143887846-143888674	GM12878	blood:	n/a	n/a
9	IKZF1	chr6:143888050-143888520	GM12878	blood:	n/a	n/a
10	CREB1	chr6:143887881-143888567	GM12878	blood:	n/a	n/a
11	POU2F2	chr6:143888001-143888588	GM12878	blood:	n/a	n/a
12	YY1	chr6:143887992-143888417	GM12878	blood:	n/a	n/a
13	RELA	chr6:143888016-143888479	GM19193	blood:	n/a	n/a
14	SPI1	chr6:143888023-143888462	GM12891	blood:	n/a	n/a
15	STAT3	chr6:143888055-143888465	GM12878	blood:	n/a	chr6:143888266-143888277 chr6:143888419-143888431
16	EP300	chr6:143887979-143888538	GM12878	blood:	n/a	chr6:143888268-143888282 chr6:143888125-143888134
17	RELA	chr6:143888026-143888517	GM12878	blood:	n/a	n/a
18	BATF	chr6:143888024-143888484	GM12878	blood:	n/a	n/a
19	BCLAF1	chr6:143888062-143888553	GM12878	blood:	n/a	chr6:143888268-143888277
20	PML	chr6:143888049-143888464	GM12878	blood:	n/a	n/a
21	RUNX3	chr6:143887944-143888953	GM12878	blood:	n/a	n/a
22	TAF1	chr6:143888003-143888422	GM12878	blood:	n/a	n/a
23	EP300	chr6:143888029-143888540	GM12878	blood:	n/a	chr6:143888268-143888282 chr6:143888125-143888134
24	NFIC	chr6:143887929-143888960	GM12878	blood:	n/a	n/a
25	BCL11A	chr6:143888019-143888525	GM12878	blood:	n/a	chr6:143888268-143888277
26	MTA3	chr6:143887907-143888653	GM12878	blood:	n/a	n/a
27	YY1	chr6:143888083-143888426	K562	blood:	n/a	n/a
28	POLR2A	chr6:143887986-143888468	GM12878	blood:	n/a	n/a
29	FOXM1	chr6:143887915-143888563	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:143888020-143888428	GM12892	blood:	n/a	n/a
31	RELA	chr6:143888055-143889065	GM12891	blood:	n/a	n/a
32	TBL1XR1	chr6:143888061-143888521	GM12878	blood:	n/a	n/a
33	ZNF384	chr6:143887994-143888428	GM12878	blood:	n/a	n/a
34	PAX5	chr6:143888076-143888419	GM12878	blood:	n/a	chr6:143888268-143888277
35	RUNX3	chr6:143887919-143889067	GM12878	blood:	n/a	n/a
36	CREB1	chr6:143887979-143888586	GM12878	blood:	n/a	n/a
37	JUND	chr6:143887856-143888745	GM12878	blood:	n/a	chr6:143888331-143888343
38	RELA	chr6:143888039-143888484	GM19099	blood:	n/a	n/a
39	POLR2A	chr6:143887996-143888348	GM12891	blood:	n/a	n/a
40	RELA	chr6:143888039-143888486	GM18505	blood:	n/a	n/a
41	MTA3	chr6:143887957-143888563	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:143887985-143888375	GM12892	blood:	n/a	n/a
43	POLR2A	chr6:143888017-143888409	GM12891	blood:	n/a	n/a
44	POLR2A	chr6:143887917-143888482	GM12878	blood:	n/a	n/a
45	ATF2	chr6:143887915-143888650	GM12878	blood:	n/a	n/a
46	PML	chr6:143887856-143888984	GM12878	blood:	n/a	n/a
47	TBP	chr6:143887978-143888459	GM12878	blood:	n/a	n/a
48	POU2F2	chr6:143888039-143888436	GM12878	blood:	n/a	n/a
49	TAF1	chr6:143888082-143888385	GM12891	blood:	n/a	n/a
50	MEF2A	chr6:143888051-143888604	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143887563..143889505-chr6:143892781..143894804,3	K562	blood:
2	chr6:143887227..143889511-chr6:143893590..143895120,2	MCF-7	breast:
3	chr6:143887563..143889505-chr6:143892781..143894804,2	K562	blood:

Variant related genes	Relation type
ENSG00000235740	TF binding region

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1054752	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155301	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11155302	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1133477	0.93[ASN][1000 genomes]
rs11961814	0.80[ASN][1000 genomes]
rs11961857	0.82[ASN][1000 genomes]
rs11961870	0.82[ASN][1000 genomes]
rs11961908	0.82[ASN][1000 genomes]
rs11961927	0.82[ASN][1000 genomes]
rs11965970	0.82[ASN][1000 genomes]
rs11970288	0.82[ASN][1000 genomes]
rs11970358	0.82[ASN][1000 genomes]
rs11970446	0.91[ASN][1000 genomes]
rs12176035	0.91[ASN][1000 genomes]
rs12191231	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12203151	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211659	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12212011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12215667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525607	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526234	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194847	0.93[ASN][1000 genomes]
rs13196809	0.82[ASN][1000 genomes]
rs13198159	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200147	0.82[ASN][1000 genomes]
rs13200325	0.82[ASN][1000 genomes]
rs13203973	0.82[ASN][1000 genomes]
rs13211390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212626	0.82[ASN][1000 genomes]
rs13216148	0.82[ASN][1000 genomes]
rs1416205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416208	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34158186	0.82[ASN][1000 genomes]
rs34199303	0.82[ASN][1000 genomes]
rs34320641	0.82[ASN][1000 genomes]
rs34373782	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34703787	0.82[ASN][1000 genomes]
rs34960207	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34973979	0.82[ASN][1000 genomes]
rs35205240	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35317420	0.82[ASN][1000 genomes]
rs35354710	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35705085	0.82[ASN][1000 genomes]
rs35826562	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35971628	0.82[ASN][1000 genomes]
rs3748072	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142501	0.82[ASN][1000 genomes]
rs55662387	0.82[ASN][1000 genomes]
rs55998335	0.82[ASN][1000 genomes]
rs56260812	0.82[ASN][1000 genomes]
rs6570565	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570566	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66648313	0.82[ASN][1000 genomes]
rs6905264	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6924422	0.82[ASN][1000 genomes]
rs6924719	0.82[ASN][1000 genomes]
rs6924940	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6924967	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6927128	0.82[ASN][1000 genomes]
rs71550999	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71551000	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753967	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754452	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774139	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285500	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321920	0.83[ASN][1000 genomes]
rs9321922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376757	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376758	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376759	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376760	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376761	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376764	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376765	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386032	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386033	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386036	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386037	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386038	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390111	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390112	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403504	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403505	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403508	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403511	0.91[ASN][1000 genomes]
rs9403512	0.82[ASN][1000 genomes]
rs9484766	0.91[ASN][1000 genomes]
rs9484767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484768	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484769	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484770	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484771	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484772	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9484773	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484774	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9496671	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496673	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496674	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496678	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496679	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496680	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9496681	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496682	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496683	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
6	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143880600-143889600	Weak transcription	NHDF-Ad	bronchial
8	chr6:143886000-143889800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143886000-143890000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:143886600-143888400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:143887000-143888400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:143887000-143888400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:143887400-143889000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:143887600-143888200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:143887600-143888200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:143887600-143888200	Flanking Active TSS	GM12878-XiMat	blood
18	chr6:143887600-143888800	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:143887800-143888200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:143887800-143889000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:143888000-143888200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:143888000-143888400	Active TSS	Primary T cells fromperipheralblood	blood
24	chr6:143888000-143888400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:143888000-143888400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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