Variant report

Variant	rs34320641
Chromosome Location	chr6:143900803-143900804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143897560..143900872-chr6:143902459..143905862,4	K562	blood:
2	chr6:143899013..143902329-chr6:143903736..143905850,3	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1054752	0.82[ASN][1000 genomes]
rs10782290	0.83[ASN][1000 genomes]
rs10979	0.82[ASN][1000 genomes]
rs11155300	0.83[ASN][1000 genomes]
rs11155305	0.88[ASN][1000 genomes]
rs1133477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961765	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11961814	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11961857	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961870	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961908	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961927	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965970	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970288	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970358	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970446	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12176035	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191231	0.82[ASN][1000 genomes]
rs12191837	0.83[ASN][1000 genomes]
rs12203151	0.80[ASN][1000 genomes]
rs12208649	0.83[ASN][1000 genomes]
rs12211659	0.83[ASN][1000 genomes]
rs12212011	0.83[ASN][1000 genomes]
rs12215667	0.83[ASN][1000 genomes]
rs12526234	0.82[ASN][1000 genomes]
rs12738	0.82[ASN][1000 genomes]
rs13194847	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13196809	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197332	0.82[ASN][1000 genomes]
rs13198159	0.82[ASN][1000 genomes]
rs13200147	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200325	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203973	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211390	0.82[ASN][1000 genomes]
rs13212626	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216148	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416205	0.82[ASN][1000 genomes]
rs1416206	0.82[ASN][1000 genomes]
rs1416207	0.82[ASN][1000 genomes]
rs28479556	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34158186	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34199303	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34373782	0.82[ASN][1000 genomes]
rs34703787	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34973979	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35205240	0.82[ASN][1000 genomes]
rs35317420	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35705085	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35826562	0.82[ASN][1000 genomes]
rs35971628	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748072	0.82[ASN][1000 genomes]
rs4142501	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662387	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998335	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56260812	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570565	0.93[ASN][1000 genomes]
rs6570566	0.93[ASN][1000 genomes]
rs66648313	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905264	0.83[ASN][1000 genomes]
rs6907272	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924422	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924719	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924940	0.93[ASN][1000 genomes]
rs6924967	0.93[ASN][1000 genomes]
rs6927128	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753967	0.82[ASN][1000 genomes]
rs7754452	0.82[ASN][1000 genomes]
rs7774497	0.82[ASN][1000 genomes]
rs9285500	0.83[ASN][1000 genomes]
rs9321922	0.83[ASN][1000 genomes]
rs9321923	0.83[ASN][1000 genomes]
rs9373394	0.82[ASN][1000 genomes]
rs9376761	0.82[ASN][1000 genomes]
rs9376762	0.82[ASN][1000 genomes]
rs9376763	0.82[ASN][1000 genomes]
rs9376764	0.82[ASN][1000 genomes]
rs9386032	0.82[ASN][1000 genomes]
rs9386033	0.82[ASN][1000 genomes]
rs9386035	0.90[EUR][1000 genomes]
rs9386036	0.82[ASN][1000 genomes]
rs9386037	0.82[ASN][1000 genomes]
rs9386038	0.83[ASN][1000 genomes]
rs9390104	0.82[ASN][1000 genomes]
rs9390106	0.89[EUR][1000 genomes]
rs9390109	0.83[ASN][1000 genomes]
rs9390110	0.83[ASN][1000 genomes]
rs9390111	0.83[ASN][1000 genomes]
rs9390112	0.83[ASN][1000 genomes]
rs9390113	0.83[ASN][1000 genomes]
rs9399447	0.83[ASN][1000 genomes]
rs9399448	0.83[ASN][1000 genomes]
rs9403504	0.80[ASN][1000 genomes]
rs9403505	0.80[ASN][1000 genomes]
rs9403506	0.82[ASN][1000 genomes]
rs9403507	0.82[ASN][1000 genomes]
rs9403508	0.82[ASN][1000 genomes]
rs9403509	0.82[ASN][1000 genomes]
rs9403511	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403512	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484767	0.82[ASN][1000 genomes]
rs9484768	0.82[ASN][1000 genomes]
rs9484769	0.83[ASN][1000 genomes]
rs9484770	0.83[ASN][1000 genomes]
rs9484771	0.83[ASN][1000 genomes]
rs9484773	0.83[ASN][1000 genomes]
rs9484776	0.82[ASN][1000 genomes]
rs9496671	0.80[ASN][1000 genomes]
rs9496676	0.83[ASN][1000 genomes]
rs9496678	0.83[ASN][1000 genomes]
rs9496679	0.83[ASN][1000 genomes]
rs9496681	0.83[ASN][1000 genomes]
rs9496682	0.90[ASN][1000 genomes]
rs9496683	0.90[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
3	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
7	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:143897600-143907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:143899200-143901000	Strong transcription	Fetal Intestine Small	intestine
10	chr6:143899200-143903200	Enhancers	Placenta	Placenta
11	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
12	chr6:143899600-143901000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:143899800-143902800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:143900400-143901000	Enhancers	Hela-S3	cervix
16	chr6:143900400-143901200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:143900400-143901200	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:143900400-143901400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:143900400-143901400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:143900400-143901400	Enhancers	HUVEC	blood vessel
21	chr6:143900400-143901400	Enhancers	NH-A	brain
22	chr6:143900400-143901400	Enhancers	Osteobl	bone
23	chr6:143900400-143907000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:143900600-143901000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:143900600-143901000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:143900600-143901000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:143900600-143901000	Enhancers	NHDF-Ad	bronchial
28	chr6:143900600-143901200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:143900600-143901200	Enhancers	Aorta	Aorta
30	chr6:143900600-143901200	Enhancers	Fetal Muscle Leg	muscle
31	chr6:143900600-143901400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:143900600-143901400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:143900600-143901400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:143900600-143901400	Enhancers	HMEC	breast
35	chr6:143900600-143901400	Enhancers	NHEK	skin
36	chr6:143900800-143901000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:143900800-143901200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:143900800-143901200	Enhancers	Adipose Nuclei	Adipose
39	chr6:143900800-143901200	Enhancers	K562	blood
40	chr6:143900800-143901400	Enhancers	Fetal Muscle Trunk	muscle
41	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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