Variant report

Variant	rs10782290
Chromosome Location	chr6:143906340-143906341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10484804	0.92[GIH][hapmap]
rs10979	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs11155300	0.81[ASN][1000 genomes]
rs11155305	0.92[ASN][1000 genomes]
rs11961814	0.81[ASN][1000 genomes]
rs11961857	0.83[ASN][1000 genomes]
rs11961870	0.83[ASN][1000 genomes]
rs11961908	0.83[ASN][1000 genomes]
rs11961927	0.83[ASN][1000 genomes]
rs11965970	0.83[ASN][1000 genomes]
rs11970288	0.83[ASN][1000 genomes]
rs11970358	0.83[ASN][1000 genomes]
rs12191837	0.81[ASN][1000 genomes]
rs12208649	0.81[ASN][1000 genomes]
rs12211659	0.81[ASN][1000 genomes]
rs12212011	0.81[ASN][1000 genomes]
rs12215667	0.81[ASN][1000 genomes]
rs12526234	0.81[ASN][1000 genomes]
rs13196809	0.83[ASN][1000 genomes]
rs13200147	0.83[ASN][1000 genomes]
rs13200325	0.83[ASN][1000 genomes]
rs13203973	0.83[ASN][1000 genomes]
rs13212626	0.83[ASN][1000 genomes]
rs13216148	0.83[ASN][1000 genomes]
rs34158186	0.83[ASN][1000 genomes]
rs34199303	0.83[ASN][1000 genomes]
rs34320641	0.83[ASN][1000 genomes]
rs34703787	0.83[ASN][1000 genomes]
rs34973979	0.83[ASN][1000 genomes]
rs35205240	0.81[ASN][1000 genomes]
rs35317420	0.83[ASN][1000 genomes]
rs35705085	0.83[ASN][1000 genomes]
rs35826562	0.81[ASN][1000 genomes]
rs35971628	0.83[ASN][1000 genomes]
rs3748072	0.86[CHB][hapmap]
rs4142501	0.83[ASN][1000 genomes]
rs55662387	0.83[ASN][1000 genomes]
rs55998335	0.83[ASN][1000 genomes]
rs56260812	0.83[ASN][1000 genomes]
rs6570565	0.89[ASN][1000 genomes]
rs6570566	0.89[ASN][1000 genomes]
rs6570567	0.92[GIH][hapmap]
rs66648313	0.83[ASN][1000 genomes]
rs6905264	0.81[ASN][1000 genomes]
rs6909701	0.84[EUR][1000 genomes]
rs6924422	0.83[ASN][1000 genomes]
rs6924719	0.83[ASN][1000 genomes]
rs6924940	0.89[ASN][1000 genomes]
rs6924967	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6927128	0.83[ASN][1000 genomes]
rs7764231	0.94[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs9285500	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs9285501	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9321920	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9321921	0.80[AMR][1000 genomes]
rs9321922	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9321923	0.81[ASN][1000 genomes]
rs9321927	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376756	0.82[CHB][hapmap]
rs9376767	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376768	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386038	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9386039	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9390109	0.81[ASN][1000 genomes]
rs9390110	0.81[ASN][1000 genomes]
rs9390111	0.80[ASN][1000 genomes]
rs9390112	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9390113	0.81[ASN][1000 genomes]
rs9390116	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390117	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9390118	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9390119	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9390120	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399447	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9399448	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9399449	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403505	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs9403507	0.86[CHB][hapmap]
rs9403512	0.83[ASN][1000 genomes]
rs9403514	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403515	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403516	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403517	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9484769	0.81[ASN][1000 genomes]
rs9484770	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9484771	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs9484773	0.81[ASN][1000 genomes]
rs9484776	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496671	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs9496676	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9496678	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs9496679	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9496680	0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9496681	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9496682	0.86[ASN][1000 genomes]
rs9496683	0.86[ASN][1000 genomes]
rs9496685	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496686	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496687	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496691	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7972	chr6:143905304-143911787	Enhancers ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
2	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:143897600-143907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
5	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:143900400-143907000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143901000-143907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:143903200-143912600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:143903400-143911800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:143903600-143907600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:143903600-143912200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:143904400-143908000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:143904600-143908000	Enhancers	Fetal Stomach	stomach
18	chr6:143904800-143906600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:143904800-143906600	Enhancers	Fetal Lung	lung
20	chr6:143905000-143907600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:143905400-143906400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:143905600-143906400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:143905600-143911400	Weak transcription	Placenta	Placenta
24	chr6:143905600-143915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:143906000-143906400	Weak transcription	Fetal Intestine Small	intestine
26	chr6:143906200-143906600	Enhancers	Gastric	stomach
27	chr6:143906200-143907000	Enhancers	Fetal Muscle Trunk	muscle

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