Variant report

Variant	rs9376768
Chromosome Location	chr6:143909492-143909493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143903236..143905601-chr6:143907118..143909608,2	K562	blood:
2	chr6:143903484..143905278-chr6:143906828..143909532,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-1	chr6:143909316-143909643	NONHSAT115358

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10782290	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10979	0.82[CHB][hapmap]
rs11155305	0.88[ASN][1000 genomes]
rs11155309	0.83[CEU][hapmap]
rs3748072	0.83[CHB][hapmap]
rs6570565	0.85[ASN][1000 genomes]
rs6570566	0.85[ASN][1000 genomes]
rs6909701	0.87[EUR][1000 genomes]
rs6924940	0.85[ASN][1000 genomes]
rs6924967	0.85[ASN][1000 genomes]
rs7764231	0.94[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs9285501	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9321920	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9321921	0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs9321922	0.83[CHB][hapmap]
rs9321927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386038	0.83[CHB][hapmap]
rs9386039	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9390112	0.83[CHB][hapmap]
rs9390116	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390117	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390118	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390119	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9390120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399447	0.83[CHB][hapmap]
rs9399448	0.82[CHB][hapmap]
rs9399449	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403507	0.82[CHB][hapmap]
rs9403514	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403515	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403516	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484770	0.83[CHB][hapmap]
rs9484771	0.83[CHB][hapmap]
rs9484776	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496676	0.83[CHB][hapmap]
rs9496678	0.83[CHB][hapmap]
rs9496679	0.83[CHB][hapmap]
rs9496680	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9496681	0.83[CHB][hapmap]
rs9496682	0.82[ASN][1000 genomes]
rs9496683	0.82[ASN][1000 genomes]
rs9496685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7972	chr6:143905304-143911787	Enhancers ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903200-143912600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:143903400-143911800	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:143903600-143912200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:143905600-143911400	Weak transcription	Placenta	Placenta
12	chr6:143905600-143915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:143906600-143915400	Weak transcription	Gastric	stomach
14	chr6:143907000-143911400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143907800-143910400	Weak transcription	Stomach Mucosa	stomach
16	chr6:143908000-143912600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:143908000-143914600	Weak transcription	Fetal Stomach	stomach
18	chr6:143908000-143915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:143908200-143911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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