Variant report

Variant	rs9321921
Chromosome Location	chr6:143895053-143895054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143894894..143897744-chr6:144327470..144329587,2	K562	blood:
2	chr6:143887227..143889511-chr6:143893590..143895120,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484804	0.86[CHB][hapmap]
rs10782290	0.80[AMR][1000 genomes]
rs10872559	0.86[ASN][1000 genomes]
rs12530338	0.86[CEU][hapmap]
rs2275345	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35914889	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570567	0.86[CHB][hapmap]
rs6909701	0.93[ASN][1000 genomes]
rs7764231	0.96[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9285501	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9321918	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321920	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321927	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376767	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9376768	0.81[AMR][1000 genomes]
rs9386039	0.89[ASN][1000 genomes]
rs9390116	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9390117	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9390118	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9390119	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9390120	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9399446	0.85[CEU][hapmap]
rs9399449	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9403510	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9403514	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403515	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403516	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403517	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9484776	0.80[AMR][1000 genomes]
rs9496680	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9496685	0.81[AMR][1000 genomes]
rs9496686	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9496687	0.81[AMR][1000 genomes]
rs9496691	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:143890800-143896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:143891000-143895200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
13	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:143892000-143896800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:143892200-143896800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:143892400-143897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:143892400-143897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:143894200-143895600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
20	chr6:143895000-143895400	ZNF genes & repeats	Fetal Intestine Small	intestine

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