Variant report

Variant	rs9403510
Chromosome Location	chr6:143892174-143892175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484804	0.84[CHD][hapmap];0.84[GIH][hapmap]
rs12530338	0.86[CEU][hapmap]
rs2275345	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35914889	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570567	0.84[CHD][hapmap];0.84[GIH][hapmap]
rs7764231	0.81[JPT][hapmap]
rs9285501	0.80[AMR][1000 genomes]
rs9321918	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9321920	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321921	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390116	0.81[AMR][1000 genomes]
rs9390117	0.81[AMR][1000 genomes]
rs9390118	0.81[AMR][1000 genomes]
rs9390119	0.81[AMR][1000 genomes]
rs9399446	0.85[CEU][hapmap]
rs9403514	0.81[AMR][1000 genomes]
rs9403515	0.81[AMR][1000 genomes]
rs9403516	0.81[AMR][1000 genomes]
rs9496680	1.00[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330377	chr6:143892114-143892287	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:143890800-143896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:143891000-143895200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:143891400-143892200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
15	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:143892000-143892200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:143892000-143892200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:143892000-143892400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:143892000-143896800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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