Variant report

Variant	rs9496680
Chromosome Location	chr6:143896915-143896916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143894894..143897744-chr6:144327470..144329587,2	K562	blood:
2	chr6:143896199..143897161-chr6:144334481..144335481,6	K562	blood:
3	chr6:143896296..143897179-chr6:144283404..144284281,2	K562	blood:
4	chr6:143896585..143897175-chr6:144262585..144264006,3	MCF-7	breast:
5	chr6:143896629..143897196-chr6:144262274..144263026,2	MCF-7	breast:
6	chr6:143896364..143897044-chr6:144261186..144261748,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1054752	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10782290	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10979	0.85[CHB][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11155300	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12191231	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12191837	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12203151	0.82[ASN][1000 genomes]
rs12208649	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12211659	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12212011	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12215667	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12525607	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12526234	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12530338	0.86[CEU][hapmap]
rs12738	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13197332	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13198159	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13211390	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1416205	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1416206	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1416207	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2275345	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34373782	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34960207	0.81[ASN][1000 genomes]
rs35205240	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35826562	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35914889	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3748072	0.86[CHB][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6905264	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71550999	0.81[AFR][1000 genomes]
rs71551000	0.84[AFR][1000 genomes]
rs7753967	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7754452	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7774497	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9285500	0.81[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9321918	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9321920	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321921	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9321922	0.86[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9321923	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9321927	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9373394	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376756	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs9376758	0.82[ASN][1000 genomes]
rs9376761	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376762	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376763	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376764	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376765	0.81[AFR][1000 genomes]
rs9376767	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376768	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9386032	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9386033	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9386036	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9386037	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9386038	0.86[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390104	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9390109	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390110	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390111	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9390112	0.86[CHB][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390113	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9390120	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399446	0.85[CEU][hapmap]
rs9399447	0.86[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9399448	0.86[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9403504	0.82[ASN][1000 genomes]
rs9403505	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs9403506	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9403507	0.85[CHB][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9403508	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9403509	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9403510	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403517	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9484767	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9484768	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9484769	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9484770	0.86[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9484771	0.86[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9484772	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9484773	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9484776	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9496671	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs9496674	0.81[ASN][1000 genomes]
rs9496676	0.86[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9496678	0.86[CHB][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9496679	0.86[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9496681	0.86[CHB][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9496682	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9496683	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9496685	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9496686	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496687	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496691	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
10	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:143892400-143897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:143892400-143897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
14	chr6:143895400-143899200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:143896200-143897200	Active TSS	NHDF-Ad	bronchial
17	chr6:143896400-143897000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:143896400-143897000	Enhancers	HUVEC	blood vessel
19	chr6:143896400-143897200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:143896400-143897400	Enhancers	Osteobl	bone
21	chr6:143896600-143897000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:143896600-143897200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:143896600-143897400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:143896800-143897000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:143896800-143897200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:143896800-143897400	Enhancers	HUES48 Cell Line	embryonic stem cell

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