Variant report

Variant	rs9386039
Chromosome Location	chr6:143916992-143916993
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143916961..143919434-chr6:143921245..143924950,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484804	0.87[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10782290	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11155309	0.84[CEU][hapmap]
rs6570567	0.87[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6909701	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7764231	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285501	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321918	0.82[ASN][1000 genomes]
rs9321921	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs9321927	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9376767	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9376768	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9376770	0.88[MEX][hapmap]
rs9390116	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390117	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390118	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390119	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9390120	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9399449	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403514	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403515	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403516	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403517	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9484776	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9496685	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9496686	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9496687	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9496691	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:143910400-143918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143910600-143918000	Weak transcription	Right Atrium	heart
10	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:143912800-143918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:143913000-143918800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:143913200-143919000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
15	chr6:143914400-143917400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:143914800-143919400	Weak transcription	Stomach Mucosa	stomach
17	chr6:143915600-143917000	Enhancers	Hela-S3	cervix
18	chr6:143915600-143917200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:143915600-143918400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:143915600-143919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:143915800-143917200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:143915800-143917400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:143915800-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:143916000-143917000	Enhancers	NH-A	brain
25	chr6:143916000-143917400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:143916000-143917600	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:143916000-143917800	Weak transcription	Left Ventricle	heart
28	chr6:143916000-143919400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:143916200-143917000	Enhancers	Fetal Intestine Small	intestine
30	chr6:143916200-143917000	Enhancers	Osteobl	bone
31	chr6:143916200-143917200	Weak transcription	Ovary	ovary
32	chr6:143916200-143917600	Weak transcription	Lung	lung
33	chr6:143916200-143918000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:143916200-143918800	Enhancers	NHDF-Ad	bronchial
35	chr6:143916600-143917000	Weak transcription	Fetal Intestine Large	intestine
36	chr6:143916600-143917000	Weak transcription	Placenta	Placenta
37	chr6:143916600-143917200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:143916600-143917400	Enhancers	HSMMtube	muscle
39	chr6:143916600-143917600	Weak transcription	NHLF	lung
40	chr6:143916600-143918200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:143916800-143917200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:143916800-143918200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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