Variant report

Variant	rs28479556
Chromosome Location	chr6:143884468-143884469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143877015..143878661-chr6:143884189..143887146,2	K562	blood:
2	chr6:143883318..143885795-chr6:143891662..143893627,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1133477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961814	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961857	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961870	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961908	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961927	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11965970	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970288	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970358	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12176035	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12203151	0.82[ASN][1000 genomes]
rs13194847	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13196809	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13200147	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13200325	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13203973	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13212626	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13216148	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34158186	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34199303	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34320641	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34703787	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34960207	0.80[ASN][1000 genomes]
rs34973979	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35317420	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35705085	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35971628	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142501	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55662387	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55998335	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56260812	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66648313	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6907272	0.83[EUR][1000 genomes]
rs6924422	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6924719	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6927128	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9376756	0.80[ASN][1000 genomes]
rs9386035	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9390106	0.85[EUR][1000 genomes]
rs9403504	0.82[ASN][1000 genomes]
rs9403505	0.82[ASN][1000 genomes]
rs9403511	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403512	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496671	0.82[ASN][1000 genomes]
rs9496674	0.80[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143875200-143888200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:143876200-143884800	Weak transcription	Fetal Stomach	stomach
4	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:143878600-143890200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:143878800-143887000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
8	chr6:143879200-143887800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:143880600-143889600	Weak transcription	NHDF-Ad	bronchial
11	chr6:143880800-143885800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:143881000-143885000	Strong transcription	Fetal Intestine Small	intestine
13	chr6:143882200-143887000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:143882400-143887000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:143882800-143886600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:143883000-143885600	Weak transcription	Fetal Heart	heart
17	chr6:143883200-143887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:143883400-143886800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:143883400-143887600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:143883600-143886800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:143883600-143887000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:143883800-143887400	Weak transcription	Primary monocytes fromperipheralblood	blood

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