Variant report

Variant	rs9390106
Chromosome Location	chr6:143892621-143892622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143883318..143885795-chr6:143891662..143893627,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155301	0.89[ASN][1000 genomes]
rs11155302	0.92[ASN][1000 genomes]
rs1133477	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11961765	0.86[ASN][1000 genomes]
rs11961814	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961857	0.89[EUR][1000 genomes]
rs11961870	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961908	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961927	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11965970	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970288	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970358	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11970446	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12176035	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12525607	0.80[ASN][1000 genomes]
rs13194847	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13196809	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13200147	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13200325	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13203973	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13212626	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13216148	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1416208	0.91[ASN][1000 genomes]
rs28479556	0.85[EUR][1000 genomes]
rs34068572	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34158186	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34199303	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34320641	0.89[EUR][1000 genomes]
rs34703787	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34973979	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35317420	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35705085	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35971628	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142501	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55662387	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55998335	0.89[EUR][1000 genomes]
rs56260812	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66648313	0.89[EUR][1000 genomes]
rs6907272	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924422	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6924719	0.89[EUR][1000 genomes]
rs6927128	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71550999	0.90[ASN][1000 genomes]
rs71551000	0.91[ASN][1000 genomes]
rs7774139	0.89[ASN][1000 genomes]
rs9376765	0.87[ASN][1000 genomes]
rs9386035	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403511	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403512	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9484774	0.89[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878000-143900800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
4	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143886400-143900400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:143887600-143895000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143888400-143898600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:143888600-143899200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:143890800-143896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:143891000-143895200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143891000-143896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:143891400-143899200	Weak transcription	Spleen	Spleen
14	chr6:143891800-143902000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:143892000-143896800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:143892200-143894200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:143892200-143896800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:143892400-143897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:143892400-143897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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