Variant report

Variant	rs12531641
Chromosome Location	chr7:121193497-121193498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11761042	1.00[ASN][1000 genomes]
rs11762591	1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766533	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770273	1.00[ASN][1000 genomes]
rs11770736	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530956	1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919087	1.00[ASN][1000 genomes]
rs2030988	1.00[ASN][1000 genomes]
rs2030989	1.00[ASN][1000 genomes]
rs2141363	1.00[ASN][1000 genomes]
rs2402579	1.00[ASN][1000 genomes]
rs34984834	1.00[ASN][1000 genomes]
rs4623347	1.00[ASN][1000 genomes]
rs55788005	1.00[ASN][1000 genomes]
rs56267923	1.00[ASN][1000 genomes]
rs56374602	1.00[ASN][1000 genomes]
rs57592381	1.00[ASN][1000 genomes]
rs57725838	1.00[ASN][1000 genomes]
rs58071425	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58163893	1.00[ASN][1000 genomes]
rs58419209	1.00[ASN][1000 genomes]
rs58659398	1.00[ASN][1000 genomes]
rs59088449	1.00[ASN][1000 genomes]
rs59469952	1.00[ASN][1000 genomes]
rs73717367	1.00[ASN][1000 genomes]
rs73717375	1.00[ASN][1000 genomes]
rs73717379	1.00[ASN][1000 genomes]
rs73717380	1.00[ASN][1000 genomes]
rs73717381	1.00[ASN][1000 genomes]
rs73717382	1.00[ASN][1000 genomes]
rs73717383	1.00[ASN][1000 genomes]
rs73717384	1.00[ASN][1000 genomes]
rs73717385	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015438	chr7:121161554-121221761	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3374823	chr7:121192141-121194689	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3336311	chr7:121192466-121194364	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121192800-121194000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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