Variant report

Variant	rs1919087
Chromosome Location	chr7:121148712-121148713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121147965..121149973-chr7:121151799..121154712,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11761042	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762591	1.00[ASN][1000 genomes]
rs11766533	1.00[ASN][1000 genomes]
rs11770273	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770736	1.00[ASN][1000 genomes]
rs12530956	1.00[ASN][1000 genomes]
rs12531641	1.00[ASN][1000 genomes]
rs12531667	1.00[ASN][1000 genomes]
rs2030988	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030989	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141363	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402579	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984834	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623347	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788005	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56267923	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374602	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57592381	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57725838	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58071425	1.00[ASN][1000 genomes]
rs58163893	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58419209	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58659398	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59088449	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59469952	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717367	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717375	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717379	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717380	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717381	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717382	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717383	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717384	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717385	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121145600-121150400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121147400-121149800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:121148200-121150800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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