Variant report

Variant	rs58163893
Chromosome Location	chr7:121153547-121153548
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121144309..121147560-chr7:121151015..121153828,3	K562	blood:
2	chr7:121147965..121149973-chr7:121151799..121154712,2	K562	blood:
3	chr7:121035021..121038674-chr7:121152068..121155542,3	K562	blood:

Variant related genes	Relation type
ENSG00000213310	Chromatin interaction
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11761042	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762591	1.00[ASN][1000 genomes]
rs11766533	1.00[ASN][1000 genomes]
rs11770273	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770736	1.00[ASN][1000 genomes]
rs12530956	1.00[ASN][1000 genomes]
rs12531641	1.00[ASN][1000 genomes]
rs12531667	1.00[ASN][1000 genomes]
rs1919087	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030988	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030989	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141363	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402579	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34984834	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623347	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788005	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56267923	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374602	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57592381	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57725838	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58071425	1.00[ASN][1000 genomes]
rs58419209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58659398	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59088449	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59469952	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717367	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717375	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717379	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717380	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717381	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717382	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717383	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717384	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717385	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121151400-121155000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:121151400-121155400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121151400-121155400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:121151600-121154800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:121151600-121155000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:121152400-121154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:121152600-121161600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:121153000-121153600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:121153000-121153600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:121153000-121153800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:121153000-121154600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:121153200-121153600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121153200-121153600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr7:121153200-121153800	Enhancers	HUVEC	blood vessel
15	chr7:121153200-121154200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121153400-121153600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:121153400-121153600	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:121153400-121154200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:121153400-121154200	Enhancers	Fetal Brain Female	brain
20	chr7:121153400-121154400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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