Variant report

Variant	rs12531846
Chromosome Location	chr7:40861278-40861279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1013575	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1013576	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10486815	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981180	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12531154	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12531482	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12532716	1.00[EUR][1000 genomes]
rs12532916	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12534713	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12534734	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12538260	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12538963	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12539159	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540647	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540736	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540807	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17171765	1.00[EUR][1000 genomes]
rs17171779	1.00[EUR][1000 genomes]
rs17171781	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171782	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17714132	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17714215	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17714523	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17770820	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1921751	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1990190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2302027	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35105954	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4720372	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720374	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720375	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4720376	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4720382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4720383	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4723975	1.00[EUR][1000 genomes]
rs4723981	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs723837	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7781779	1.00[EUR][1000 genomes]
rs7794957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40855200-40864000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:40855600-40862400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:40855600-40866000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:40855800-40866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:40856000-40862200	Weak transcription	Osteobl	bone
6	chr7:40856400-40865200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:40857000-40863600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:40858000-40862400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:40858000-40864200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:40858200-40862200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:40858200-40862200	Weak transcription	HMEC	breast
12	chr7:40858200-40863400	Weak transcription	NHEK	skin
13	chr7:40858200-40863800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:40861200-40865600	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links