Variant report

Variant	rs12534734
Chromosome Location	chr7:40807540-40807541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1013575	1.00[EUR][1000 genomes]
rs1013576	1.00[EUR][1000 genomes]
rs10486815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11981180	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12531154	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12531482	1.00[EUR][1000 genomes]
rs12531846	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12532716	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532916	1.00[EUR][1000 genomes]
rs12534713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538260	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12538963	1.00[EUR][1000 genomes]
rs12539159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12540647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12540736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12540807	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171765	1.00[EUR][1000 genomes]
rs17171779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17714132	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17714215	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17714523	1.00[EUR][1000 genomes]
rs17770820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921751	1.00[EUR][1000 genomes]
rs1990190	1.00[EUR][1000 genomes]
rs2302027	1.00[EUR][1000 genomes]
rs35105954	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720372	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4720374	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4720375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4720382	1.00[EUR][1000 genomes]
rs4720383	1.00[EUR][1000 genomes]
rs4723975	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4723981	1.00[EUR][1000 genomes]
rs723837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7781779	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794957	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40798200-40809400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:40801000-40808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:40803800-40811600	Weak transcription	Aorta	Aorta
4	chr7:40804600-40810000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:40804600-40810400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:40806200-40811600	Weak transcription	Primary hematopoietic stem cells	blood

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