Variant report

Variant	rs17171765
Chromosome Location	chr7:40736314-40736315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1013575	1.00[EUR][1000 genomes]
rs1013576	1.00[EUR][1000 genomes]
rs10486815	1.00[EUR][1000 genomes]
rs11981180	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs12531154	1.00[EUR][1000 genomes]
rs12531482	1.00[EUR][1000 genomes]
rs12531846	1.00[EUR][1000 genomes]
rs12532716	1.00[EUR][1000 genomes]
rs12532916	1.00[EUR][1000 genomes]
rs12534713	1.00[EUR][1000 genomes]
rs12534734	1.00[EUR][1000 genomes]
rs12538260	1.00[EUR][1000 genomes]
rs12538963	1.00[EUR][1000 genomes]
rs12539159	1.00[EUR][1000 genomes]
rs12540647	1.00[EUR][1000 genomes]
rs12540736	1.00[EUR][1000 genomes]
rs12540807	1.00[EUR][1000 genomes]
rs17171779	1.00[EUR][1000 genomes]
rs17171781	1.00[EUR][1000 genomes]
rs17171782	1.00[EUR][1000 genomes]
rs17714132	1.00[EUR][1000 genomes]
rs17714215	1.00[EUR][1000 genomes]
rs17714523	1.00[EUR][1000 genomes]
rs17770820	1.00[EUR][1000 genomes]
rs1921751	1.00[EUR][1000 genomes]
rs1990190	1.00[EUR][1000 genomes]
rs2302027	1.00[EUR][1000 genomes]
rs35105954	1.00[EUR][1000 genomes]
rs4720372	1.00[EUR][1000 genomes]
rs4720374	1.00[EUR][1000 genomes]
rs4720375	1.00[EUR][1000 genomes]
rs4720376	1.00[EUR][1000 genomes]
rs4720382	1.00[EUR][1000 genomes]
rs4720383	1.00[EUR][1000 genomes]
rs4723975	1.00[EUR][1000 genomes]
rs4723981	1.00[EUR][1000 genomes]
rs58811666	0.91[AMR][1000 genomes]
rs723837	1.00[EUR][1000 genomes]
rs7781779	1.00[EUR][1000 genomes]
rs7794957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv887988	chr7:40685811-40782572	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40723200-40737200	Weak transcription	Osteobl	bone
2	chr7:40723600-40737400	Weak transcription	HSMM	muscle
3	chr7:40734000-40737400	Weak transcription	Aorta	Aorta
4	chr7:40734600-40737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:40734600-40737200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:40734600-40737400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:40734600-40740800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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