The 2.0 version of rSNPBase

Variant report

Variant rs1253217
Chromosome Location chr1:77649415-77649416
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77606200-77651600 Weak transcription Aorta Aorta
2 chr1:77616200-77663200 Weak transcription Brain Hippocampus Middle brain
3 chr1:77626000-77662600 Weak transcription Thymus Thymus
4 chr1:77626000-77684200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:77626800-77668000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:77626800-77674800 Weak transcription Ovary ovary
7 chr1:77626800-77676200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:77630800-77652000 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:77630800-77660600 Weak transcription Left Ventricle heart
10 chr1:77631800-77660600 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:77634400-77656600 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr1:77638200-77662200 Weak transcription Small Intestine intestine
13 chr1:77643400-77649800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:77643400-77669600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:77643600-77663000 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:77643600-77672600 Weak transcription Fetal Lung lung
17 chr1:77643800-77674400 Weak transcription Psoas Muscle Psoas
18 chr1:77644000-77654800 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr1:77644200-77652000 Weak transcription Primary B cells from cord blood blood
20 chr1:77645200-77649600 Weak transcription Primary T cells from cord blood blood
21 chr1:77645600-77661600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:77645800-77654600 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:77646000-77650200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:77646200-77660200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:77648000-77649600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:77648000-77660800 Weak transcription Spleen Spleen
27 chr1:77648400-77650200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:77648400-77684000 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr1:77648600-77652400 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:77648800-77650200 Weak transcription Stomach Smooth Muscle stomach
31 chr1:77648800-77661400 Weak transcription Fetal Muscle Trunk muscle
32 chr1:77649000-77679800 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:77649200-77654800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:77649200-77672400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015