Variant report

Variant	rs4949649
Chromosome Location	chr11:10443388-10443389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1028737	0.84[ASN][1000 genomes]
rs10782640	0.89[ASN][1000 genomes]
rs11162271	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1146673	0.88[ASN][1000 genomes]
rs1146674	0.88[ASN][1000 genomes]
rs1146675	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11806823	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12032956	0.88[ASN][1000 genomes]
rs12039417	0.82[ASN][1000 genomes]
rs12093471	0.89[ASN][1000 genomes]
rs1253217	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1253225	0.82[ASN][1000 genomes]
rs12562725	0.84[ASN][1000 genomes]
rs1270496	0.83[ASN][1000 genomes]
rs1314045	0.87[ASN][1000 genomes]
rs169216	0.89[ASN][1000 genomes]
rs1779188	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs199710	0.86[ASN][1000 genomes]
rs199711	0.89[ASN][1000 genomes]
rs199715	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2051127	0.81[ASN][1000 genomes]
rs2069224	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2134351	0.89[ASN][1000 genomes]
rs4399204	0.87[ASN][1000 genomes]
rs4443938	0.88[ASN][1000 genomes]
rs4509622	0.89[ASN][1000 genomes]
rs4949766	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4949767	0.89[ASN][1000 genomes]
rs4949771	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6603934	0.89[ASN][1000 genomes]
rs6603936	0.86[ASN][1000 genomes]
rs6668949	0.87[ASN][1000 genomes]
rs713232	0.87[ASN][1000 genomes]
rs71592399	0.84[ASN][1000 genomes]
rs7417698	0.84[ASN][1000 genomes]
rs7522008	0.89[ASN][1000 genomes]
rs7524151	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7525056	0.88[ASN][1000 genomes]
rs7535408	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7538430	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7543898	0.89[ASN][1000 genomes]
rs940282	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10441800-10445400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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