Variant report

Variant	rs12534822
Chromosome Location	chr7:124915310-124915311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10279503	0.87[ASN][1000 genomes]
rs11768552	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13226465	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1427579	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1427586	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17329822	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17388970	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2003139	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34593234	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731240	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6948143	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957121	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6961484	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6967665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969306	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7810705	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs952001	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs952002	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024270	chr7:124900057-124945551	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124912200-124916200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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