Variant report

Variant	rs13226465
Chromosome Location	chr7:124897140-124897141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10279503	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1031955	0.86[CHB][hapmap]
rs1086964	0.80[ASN][1000 genomes]
rs11768552	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975363	0.81[CHB][hapmap]
rs12530620	0.82[EUR][1000 genomes]
rs12534822	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1383749	0.81[CHB][hapmap]
rs1383750	0.81[CHB][hapmap]
rs1427579	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1427586	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1454126	0.80[ASN][1000 genomes]
rs1481338	0.81[CHB][hapmap]
rs17329822	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17388970	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902003	0.80[ASN][1000 genomes]
rs2003139	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402763	0.82[CHB][hapmap]
rs2968865	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs34593234	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731240	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs585608	0.86[CHB][hapmap]
rs589823	0.85[CHB][hapmap]
rs606229	0.85[CHB][hapmap]
rs607260	0.86[CHB][hapmap]
rs616697	0.86[CHB][hapmap]
rs628365	0.85[CHB][hapmap]
rs632459	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs635682	0.86[CHB][hapmap]
rs636161	0.85[CHB][hapmap]
rs648619	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs651869	0.86[CHB][hapmap]
rs659987	0.85[CHB][hapmap]
rs662165	0.85[CHB][hapmap]
rs665753	0.85[CHB][hapmap]
rs676037	0.85[CHB][hapmap]
rs683707	0.85[CHB][hapmap]
rs684345	0.81[CHB][hapmap]
rs685909	0.85[CHB][hapmap]
rs6948143	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6957121	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967665	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6969306	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7797428	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7810705	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs792616	0.80[ASN][1000 genomes]
rs792627	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs952001	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952002	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1029627	chr7:124810399-124901651	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124887400-124898000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:124892800-124898000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:124895000-124897600	Enhancers	Fetal Lung	lung
4	chr7:124895000-124897800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:124895200-124898800	Enhancers	Fetal Heart	heart
6	chr7:124895600-124897400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:124896000-124897200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:124896000-124897400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr7:124896000-124898800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:124896000-124900000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
11	chr7:124896200-124898200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:124896200-124899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:124896400-124897200	Weak transcription	K562	blood
14	chr7:124896400-124897600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:124896400-124897600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:124896800-124897200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:124897000-124897200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:124897000-124897200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:124897000-124897400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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