Variant report

Variant	rs683707
Chromosome Location	chr7:124739829-124739830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124738749..124741628-chr7:124743456..124745788,2	K562	blood:

Extended variants
information (count: 247 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:241)

rs_ID	r²[population]
rs1006334	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs10081226	0.80[ASN][1000 genomes]
rs10081265	0.80[ASN][1000 genomes]
rs10081290	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10081336	0.80[ASN][1000 genomes]
rs10081375	0.80[ASN][1000 genomes]
rs1011721	0.82[ASN][1000 genomes]
rs1011722	0.82[ASN][1000 genomes]
rs1011723	0.82[ASN][1000 genomes]
rs1021080	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs10227119	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10228686	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10229152	0.81[AFR][1000 genomes]
rs10231355	0.80[ASN][1000 genomes]
rs10231818	0.80[ASN][1000 genomes]
rs10234592	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10239507	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10243992	0.81[ASN][1000 genomes]
rs10247349	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10252039	0.81[AFR][1000 genomes]
rs10252579	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10252798	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10254199	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10255638	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10256218	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10257712	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10258873	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10264210	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10264288	0.93[ASW][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10264766	0.80[ASN][1000 genomes]
rs1026836	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs1026837	0.90[ASN][1000 genomes]
rs1026839	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10269342	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs10270051	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10272889	0.80[ASN][1000 genomes]
rs10274820	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10275346	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs10276834	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10279816	0.80[ASN][1000 genomes]
rs10280341	0.80[ASN][1000 genomes]
rs1031955	0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10500098	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10954050	0.80[ASN][1000 genomes]
rs10954051	0.80[ASN][1000 genomes]
rs10954056	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10954062	0.88[ASN][1000 genomes]
rs11761669	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs11763920	0.90[ASN][1000 genomes]
rs11767649	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11767737	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11769711	0.80[ASN][1000 genomes]
rs11975363	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11980178	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11981797	0.80[ASN][1000 genomes]
rs12111658	0.80[ASN][1000 genomes]
rs12111660	0.80[ASN][1000 genomes]
rs12112909	0.85[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs12113765	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12533918	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs12534466	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12535807	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs12536146	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12537431	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12538641	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12539580	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs12540261	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs12706629	0.80[ASN][1000 genomes]
rs13224820	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs13231916	0.90[ASN][1000 genomes]
rs13233978	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13234368	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs13234634	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13240043	0.88[ASN][1000 genomes]
rs13240512	0.80[ASN][1000 genomes]
rs13307657	0.82[ASN][1000 genomes]
rs1351471	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1383749	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1383750	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1383751	0.80[ASN][1000 genomes]
rs1404898	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1471571	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1481327	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1481328	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1481329	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1481330	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1481331	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1481332	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1481337	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]
rs1481338	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1481339	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1481340	0.80[ASN][1000 genomes]
rs1481341	0.84[GIH][hapmap]
rs1481342	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1481343	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1525614	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs1525618	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1525619	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1531715	0.88[ASN][1000 genomes]
rs1531716	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1552118	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1552119	0.88[ASN][1000 genomes]
rs1552120	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1600738	0.90[ASN][1000 genomes]
rs1600739	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1600740	0.90[ASN][1000 genomes]
rs1600741	0.83[YRI][hapmap]
rs1600743	0.80[ASN][1000 genomes]
rs1600745	0.80[ASN][1000 genomes]
rs1600746	0.80[ASN][1000 genomes]
rs1842616	0.80[ASN][1000 genomes]
rs1871770	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1871771	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1904975	0.84[GIH][hapmap]
rs1986124	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1994022	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1994023	0.80[ASN][1000 genomes]
rs1994024	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs1994025	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2017928	0.88[ASN][1000 genomes]
rs2127971	0.82[ASN][1000 genomes]
rs2170351	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2170353	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2219953	0.90[ASN][1000 genomes]
rs2402756	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2402757	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2402760	0.80[ASN][1000 genomes]
rs2402762	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2402763	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs28491035	0.86[ASN][1000 genomes]
rs28807101	0.82[ASN][1000 genomes]
rs28817916	0.80[ASN][1000 genomes]
rs28820311	0.80[ASN][1000 genomes]
rs2929320	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929323	0.96[ASN][1000 genomes]
rs2949802	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2968865	0.90[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.81[LWK][hapmap]
rs2968867	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34630567	0.88[ASN][1000 genomes]
rs34865746	0.90[ASN][1000 genomes]
rs35929436	0.82[ASN][1000 genomes]
rs3900363	0.90[ASN][1000 genomes]
rs3903521	0.90[ASN][1000 genomes]
rs3903522	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3903523	0.90[ASN][1000 genomes]
rs4272297	0.90[ASN][1000 genomes]
rs4283967	0.81[GIH][hapmap]
rs585608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589823	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597279	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606229	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs607260	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs616697	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs632459	0.86[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];0.83[ASN][1000 genomes]
rs635682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635736	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs636161	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs636721	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs637482	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639239	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466963	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6466964	0.80[ASN][1000 genomes]
rs6466965	0.80[ASN][1000 genomes]
rs6466966	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs6466967	0.80[ASN][1000 genomes]
rs6466968	0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs6466969	0.80[ASN][1000 genomes]
rs6466970	0.82[ASN][1000 genomes]
rs6466971	0.81[ASN][1000 genomes]
rs6466972	0.82[ASN][1000 genomes]
rs6466982	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6466989	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6466990	0.91[ASN][1000 genomes]
rs6466993	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs648619	0.90[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap]
rs651869	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs659987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662165	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665753	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs672965	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684345	1.00[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs685909	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942997	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6945951	0.90[ASN][1000 genomes]
rs6952915	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs6954614	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6957525	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs6961441	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs6963594	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6964090	0.90[ASN][1000 genomes]
rs6967707	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs6971179	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6971413	0.82[ASN][1000 genomes]
rs6977313	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs719972	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs723444	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs7776744	0.80[ASN][1000 genomes]
rs7776821	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7777126	0.82[ASN][1000 genomes]
rs7778875	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7779594	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7780392	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7786384	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7787025	0.82[ASN][1000 genomes]
rs7787605	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap]
rs7787765	0.82[ASN][1000 genomes]
rs7788066	0.88[ASN][1000 genomes]
rs7788458	0.88[ASN][1000 genomes]
rs7790975	0.80[ASN][1000 genomes]
rs7791399	0.80[ASN][1000 genomes]
rs7791488	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7792654	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7794565	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7794959	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7795199	0.80[ASN][1000 genomes]
rs7795218	0.80[ASN][1000 genomes]
rs7795233	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7795605	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7795611	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7795934	0.88[ASN][1000 genomes]
rs7799518	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7799523	0.80[ASN][1000 genomes]
rs7799535	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7799712	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7802007	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7802210	0.88[ASN][1000 genomes]
rs7806126	0.82[ASN][1000 genomes]
rs7806530	0.95[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs7806548	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7810654	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs792627	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs900047	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs922711	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs922712	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9332427	0.80[ASN][1000 genomes]
rs962863	0.85[ASW][hapmap];0.84[GIH][hapmap];0.81[LWK][hapmap]
rs9691875	0.88[ASN][1000 genomes]
rs9692367	0.88[ASN][1000 genomes]
rs998054	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs683707	RP11-3B12.1	cis	Artery Tibial	GTEx
rs683707	FLNC	cis	parietal	SCAN
rs683707	RP11-3B12.4	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124739600-124740000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:124739800-124776000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links