Variant report

Variant	rs7788066
Chromosome Location	chr7:124630145-124630146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr7:124629953-124630389	IMR90	lung:	n/a	n/a
2	NFIC	chr7:124629837-124630493	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124568419..124570704-chr7:124629136..124631296,2	MCF-7	breast:
2	chr7:124625632..124627676-chr7:124628734..124631039,2	MCF-7	breast:

Variant related genes	Relation type
POT1-AS1	TF binding region
ENSG00000128513	Chromatin interaction
ENSG00000224897	Chromatin interaction

Extended variants
information (count: 369 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:359)

rs_ID	r²[population]
rs10081226	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10081265	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10081266	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10081290	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081336	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081375	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10085793	0.85[EUR][1000 genomes]
rs10085867	0.84[EUR][1000 genomes]
rs10085888	0.85[EUR][1000 genomes]
rs1011721	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011722	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011723	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10156168	0.85[EUR][1000 genomes]
rs1021080	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10223980	0.85[EUR][1000 genomes]
rs10224946	0.87[EUR][1000 genomes]
rs10225140	0.85[EUR][1000 genomes]
rs10227119	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10227821	0.82[EUR][1000 genomes]
rs10228376	0.85[EUR][1000 genomes]
rs10228459	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10228682	0.87[EUR][1000 genomes]
rs10229152	0.87[EUR][1000 genomes]
rs10231355	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10231491	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10231818	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10233306	0.85[EUR][1000 genomes]
rs10233589	0.82[EUR][1000 genomes]
rs10236403	0.86[EUR][1000 genomes]
rs10236782	0.82[EUR][1000 genomes]
rs10239507	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243479	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10243490	0.86[EUR][1000 genomes]
rs10243736	0.83[EUR][1000 genomes]
rs10243992	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244797	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10245872	0.87[EUR][1000 genomes]
rs10246553	0.83[EUR][1000 genomes]
rs10250202	0.83[EUR][1000 genomes]
rs10250911	0.85[EUR][1000 genomes]
rs10252039	0.86[EUR][1000 genomes]
rs10252072	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10252443	0.86[EUR][1000 genomes]
rs10252579	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10252798	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10255209	0.88[EUR][1000 genomes]
rs10255638	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10257255	0.85[EUR][1000 genomes]
rs10257712	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10260227	0.82[EUR][1000 genomes]
rs10260710	0.83[EUR][1000 genomes]
rs10261610	0.82[EUR][1000 genomes]
rs10263573	0.84[EUR][1000 genomes]
rs10264288	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10264766	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1026837	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1026839	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269011	0.85[EUR][1000 genomes]
rs10270784	0.81[EUR][1000 genomes]
rs10271687	0.85[EUR][1000 genomes]
rs10272583	0.85[EUR][1000 genomes]
rs10272889	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10274820	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10279816	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10280341	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1031955	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500098	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954045	0.85[EUR][1000 genomes]
rs10954048	0.87[EUR][1000 genomes]
rs10954049	0.87[EUR][1000 genomes]
rs10954050	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954051	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954056	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10954062	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11763920	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11767649	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11767737	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11769711	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11975363	0.91[ASN][1000 genomes]
rs11975788	0.85[EUR][1000 genomes]
rs11978628	0.82[EUR][1000 genomes]
rs11978656	0.82[EUR][1000 genomes]
rs11979724	0.80[EUR][1000 genomes]
rs11980925	0.85[EUR][1000 genomes]
rs11981797	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11983251	0.83[EUR][1000 genomes]
rs12111658	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12111660	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12112909	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12154816	0.84[EUR][1000 genomes]
rs12155120	0.85[EUR][1000 genomes]
rs12530981	0.85[EUR][1000 genomes]
rs12533560	0.88[EUR][1000 genomes]
rs12534466	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536017	0.88[EUR][1000 genomes]
rs12536146	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12536575	0.85[EUR][1000 genomes]
rs12537161	0.87[EUR][1000 genomes]
rs12538083	0.88[EUR][1000 genomes]
rs12538333	0.85[EUR][1000 genomes]
rs12538641	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12540168	0.82[EUR][1000 genomes]
rs12666427	0.85[EUR][1000 genomes]
rs12706626	0.80[EUR][1000 genomes]
rs12706629	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13228116	0.85[EUR][1000 genomes]
rs13231916	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13240043	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13240512	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13307657	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1351471	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1383749	0.91[ASN][1000 genomes]
rs1383750	0.91[ASN][1000 genomes]
rs1383751	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468377	0.83[EUR][1000 genomes]
rs1468378	0.83[EUR][1000 genomes]
rs1481328	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481329	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481331	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1481332	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1481337	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1481338	0.91[ASN][1000 genomes]
rs1481339	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1481340	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1481341	0.88[EUR][1000 genomes]
rs1481343	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1531715	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1531716	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552119	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552120	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600738	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600739	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600740	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600743	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1600745	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1600746	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17147494	0.82[EUR][1000 genomes]
rs17147496	0.82[EUR][1000 genomes]
rs17147583	0.83[EUR][1000 genomes]
rs1842615	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1842616	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1871770	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1904975	0.88[EUR][1000 genomes]
rs1994022	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1994023	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2017928	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040926	0.83[EUR][1000 genomes]
rs2054585	0.88[EUR][1000 genomes]
rs2079368	0.85[EUR][1000 genomes]
rs2107936	0.80[EUR][1000 genomes]
rs2127971	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2170353	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2219953	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2219954	0.88[EUR][1000 genomes]
rs2286173	0.83[EUR][1000 genomes]
rs2286174	0.83[EUR][1000 genomes]
rs2301930	0.83[EUR][1000 genomes]
rs2402753	0.82[EUR][1000 genomes]
rs2402755	0.82[EUR][1000 genomes]
rs2402756	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2402760	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2402762	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2402763	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28409696	0.88[EUR][1000 genomes]
rs28491035	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28807101	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28817916	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28820311	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2896360	0.82[EUR][1000 genomes]
rs2896361	0.85[EUR][1000 genomes]
rs2929320	0.91[ASN][1000 genomes]
rs2929323	0.91[ASN][1000 genomes]
rs2949802	0.91[ASN][1000 genomes]
rs2968867	0.91[ASN][1000 genomes]
rs3213667	0.85[EUR][1000 genomes]
rs34014883	0.85[EUR][1000 genomes]
rs34395250	0.84[EUR][1000 genomes]
rs34600520	0.85[EUR][1000 genomes]
rs34618371	0.85[EUR][1000 genomes]
rs34630567	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34865746	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35184624	0.84[EUR][1000 genomes]
rs35332300	0.81[EUR][1000 genomes]
rs35630355	0.88[EUR][1000 genomes]
rs3815221	0.85[EUR][1000 genomes]
rs3900363	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903521	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903522	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3903523	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3919896	0.88[EUR][1000 genomes]
rs4146110	0.88[EUR][1000 genomes]
rs4272297	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4279518	0.86[EUR][1000 genomes]
rs4283967	0.88[EUR][1000 genomes]
rs4311608	0.85[EUR][1000 genomes]
rs4319000	0.86[EUR][1000 genomes]
rs4360235	0.86[EUR][1000 genomes]
rs4377885	0.87[EUR][1000 genomes]
rs4379394	0.85[EUR][1000 genomes]
rs4383910	0.88[EUR][1000 genomes]
rs4422720	0.84[EUR][1000 genomes]
rs4461840	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4463363	0.85[EUR][1000 genomes]
rs4467880	0.80[EUR][1000 genomes]
rs4501523	0.88[EUR][1000 genomes]
rs4529402	0.83[EUR][1000 genomes]
rs4552839	0.84[EUR][1000 genomes]
rs4568548	0.88[EUR][1000 genomes]
rs4584095	0.84[EUR][1000 genomes]
rs4728009	0.84[EUR][1000 genomes]
rs4728010	0.85[EUR][1000 genomes]
rs4728011	0.84[EUR][1000 genomes]
rs4728012	0.85[EUR][1000 genomes]
rs4731216	0.83[EUR][1000 genomes]
rs4731217	0.84[EUR][1000 genomes]
rs4731218	0.83[EUR][1000 genomes]
rs4731221	0.85[EUR][1000 genomes]
rs4731222	0.83[EUR][1000 genomes]
rs4731223	0.85[EUR][1000 genomes]
rs4731224	0.85[EUR][1000 genomes]
rs56321660	0.85[EUR][1000 genomes]
rs57458159	0.85[EUR][1000 genomes]
rs585608	0.88[ASN][1000 genomes]
rs589823	0.84[ASN][1000 genomes]
rs597279	0.88[ASN][1000 genomes]
rs606229	0.84[ASN][1000 genomes]
rs607260	0.84[ASN][1000 genomes]
rs616697	0.88[ASN][1000 genomes]
rs62478914	0.83[EUR][1000 genomes]
rs635682	0.88[ASN][1000 genomes]
rs635736	0.84[ASN][1000 genomes]
rs636161	0.84[ASN][1000 genomes]
rs636721	0.84[ASN][1000 genomes]
rs637482	0.88[ASN][1000 genomes]
rs639239	0.84[ASN][1000 genomes]
rs6415362	0.87[EUR][1000 genomes]
rs6466948	0.81[EUR][1000 genomes]
rs6466949	0.81[EUR][1000 genomes]
rs6466950	0.81[EUR][1000 genomes]
rs6466952	0.85[EUR][1000 genomes]
rs6466953	0.83[EUR][1000 genomes]
rs6466954	0.84[EUR][1000 genomes]
rs6466955	0.84[EUR][1000 genomes]
rs6466956	0.85[EUR][1000 genomes]
rs6466962	0.82[EUR][1000 genomes]
rs6466963	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466964	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466965	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466966	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466967	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466968	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466969	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466970	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466971	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466972	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466982	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466990	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466993	0.86[ASN][1000 genomes]
rs651869	0.84[ASN][1000 genomes]
rs659987	0.88[ASN][1000 genomes]
rs662165	0.88[ASN][1000 genomes]
rs665753	0.84[ASN][1000 genomes]
rs672965	0.88[ASN][1000 genomes]
rs676037	0.88[ASN][1000 genomes]
rs683707	0.88[ASN][1000 genomes]
rs684345	0.84[ASN][1000 genomes]
rs685909	0.84[ASN][1000 genomes]
rs6945104	0.87[EUR][1000 genomes]
rs6945951	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948181	0.84[EUR][1000 genomes]
rs6948345	0.87[EUR][1000 genomes]
rs6949341	0.88[EUR][1000 genomes]
rs6953168	0.85[EUR][1000 genomes]
rs6954614	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6956499	0.87[EUR][1000 genomes]
rs6956638	0.87[EUR][1000 genomes]
rs6959244	0.88[EUR][1000 genomes]
rs6959491	0.88[EUR][1000 genomes]
rs6959665	0.84[EUR][1000 genomes]
rs6960027	0.85[EUR][1000 genomes]
rs6960504	0.86[EUR][1000 genomes]
rs6960683	0.87[EUR][1000 genomes]
rs6963177	0.81[EUR][1000 genomes]
rs6964090	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6966415	0.87[EUR][1000 genomes]
rs6967988	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6968187	0.88[EUR][1000 genomes]
rs6968573	0.86[EUR][1000 genomes]
rs6968693	0.88[EUR][1000 genomes]
rs6971179	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6971413	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6973134	0.84[EUR][1000 genomes]
rs6973812	0.85[EUR][1000 genomes]
rs6980448	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71213274	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71576215	0.82[EUR][1000 genomes]
rs719972	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs720615	0.82[EUR][1000 genomes]
rs720616	0.82[EUR][1000 genomes]
rs727506	0.83[EUR][1000 genomes]
rs7357296	0.87[EUR][1000 genomes]
rs7456392	0.87[EUR][1000 genomes]
rs7776744	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7776821	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7777126	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778544	0.86[EUR][1000 genomes]
rs7778956	0.86[EUR][1000 genomes]
rs7779594	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7780392	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7781148	0.83[EUR][1000 genomes]
rs7782031	0.85[EUR][1000 genomes]
rs7782327	0.85[EUR][1000 genomes]
rs7782340	0.85[EUR][1000 genomes]
rs7782354	0.88[EUR][1000 genomes]
rs7782410	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7782525	0.87[EUR][1000 genomes]
rs7783781	0.82[EUR][1000 genomes]
rs7786384	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7787025	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7787765	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7788458	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7789859	0.85[EUR][1000 genomes]
rs7790975	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7791399	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7791488	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7792883	0.82[EUR][1000 genomes]
rs7793258	0.82[EUR][1000 genomes]
rs7793441	0.87[EUR][1000 genomes]
rs7794631	0.88[EUR][1000 genomes]
rs7794710	0.88[EUR][1000 genomes]
rs7795199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795218	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795233	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795492	0.84[EUR][1000 genomes]
rs7795605	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795611	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795934	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7796015	0.85[EUR][1000 genomes]
rs7796150	0.85[EUR][1000 genomes]
rs7799518	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7799523	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7799535	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7799747	0.81[EUR][1000 genomes]
rs7799938	0.85[EUR][1000 genomes]
rs7801140	0.85[EUR][1000 genomes]
rs7802007	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7802210	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7806126	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7806548	0.91[ASN][1000 genomes]
rs7808203	0.83[EUR][1000 genomes]
rs7811607	0.82[EUR][1000 genomes]
rs7811608	0.82[EUR][1000 genomes]
rs900047	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9332427	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs962863	0.88[EUR][1000 genomes]
rs9690998	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9691875	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9692367	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9886177	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1016655	chr7:124575684-124684279	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1032336	chr7:124590688-124673373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1025873	chr7:124591433-124668423	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2761363	chr7:124591433-124673373	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1034654	chr7:124591433-124673373	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv608343	chr7:124610346-124674022	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv3362990	chr7:124630102-124630327	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7788066	RP11-3B12.4	cis	Artery Tibial	GTEx
rs7788066	RP11-3B12.1	cis	Artery Tibial	GTEx
rs7788066	RP11-3B12.1	cis	Artery Aorta	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124629600-124632600	Weak transcription	Stomach Mucosa	stomach
2	chr7:124629800-124630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:124630000-124630400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

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