Variant report

Variant	rs7782410
Chromosome Location	chr7:124571104-124571105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr7:124571083-124571216	HepG2	liver:	n/a	n/a
2	REST	chr7:124570912-124571285	PFSK-1	brain:	n/a	chr7:124571149-124571158
3	ATF1	chr7:124570984-124571240	K562	blood:	n/a	n/a
4	E2F4	chr7:124571016-124571161	MCF10A-Er-Src	breast:	n/a	n/a
5	REST	chr7:124570991-124571354	PFSK-1	brain:	n/a	chr7:124571149-124571158
6	REST	chr7:124571038-124571189	PFSK-1	brain:	n/a	chr7:124571149-124571158

No.	Distal block	Cell Line	Cell type
1	chr7:124570010..124572071-chr7:124632097..124634842,3	MCF-7	breast:
2	chr7:124570081..124571601-chr7:127030637..127032791,2	K562	blood:
3	chr7:124570250..124573246-chr7:124575640..124577419,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPAM1-4	chr7:124570005-124572498	l_3475_chr7:124565823-124571862_testes

Variant related genes	Relation type
POT1	TF binding region
ENSG00000224897	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 344 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:336)

rs_ID	r²[population]
rs10081226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10081265	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10081266	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10081290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10081336	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10081375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10085793	0.91[EUR][1000 genomes]
rs10085867	0.90[EUR][1000 genomes]
rs10085888	0.91[EUR][1000 genomes]
rs1011721	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011722	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011723	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10156168	0.91[EUR][1000 genomes]
rs1021080	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10223980	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10224946	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10225140	0.91[EUR][1000 genomes]
rs10227119	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10227821	0.88[EUR][1000 genomes]
rs10228376	0.91[EUR][1000 genomes]
rs10228459	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10228682	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10229152	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10231355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10231491	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10231818	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10233306	0.91[EUR][1000 genomes]
rs10233589	0.88[EUR][1000 genomes]
rs10236403	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10236782	0.88[EUR][1000 genomes]
rs10237080	0.85[EUR][1000 genomes]
rs10239507	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10243479	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243490	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10243736	0.89[EUR][1000 genomes]
rs10243992	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244797	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245872	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10246553	0.89[EUR][1000 genomes]
rs10250202	0.89[EUR][1000 genomes]
rs10250911	0.91[EUR][1000 genomes]
rs10252039	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10252072	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10252443	0.92[EUR][1000 genomes]
rs10252579	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10252798	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10255209	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10255638	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10257255	0.91[EUR][1000 genomes]
rs10257712	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10260227	0.88[EUR][1000 genomes]
rs10260710	0.89[EUR][1000 genomes]
rs10261610	0.88[EUR][1000 genomes]
rs10263573	0.90[EUR][1000 genomes]
rs10264288	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10264766	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1026837	0.82[ASN][1000 genomes]
rs1026839	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10269011	0.91[EUR][1000 genomes]
rs10270784	0.87[EUR][1000 genomes]
rs10271687	0.91[EUR][1000 genomes]
rs10272583	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10272889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10274820	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10279816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10280341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10500098	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10954045	0.91[EUR][1000 genomes]
rs10954048	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10954049	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10954050	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10954051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10954056	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10954062	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11763920	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11767649	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11767737	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11769711	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11975788	0.91[EUR][1000 genomes]
rs11978628	0.88[EUR][1000 genomes]
rs11978656	0.88[EUR][1000 genomes]
rs11979724	0.86[EUR][1000 genomes]
rs11980925	0.91[EUR][1000 genomes]
rs11981797	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11983251	0.89[EUR][1000 genomes]
rs12111658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12111660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12112909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154816	0.90[EUR][1000 genomes]
rs12155120	0.91[EUR][1000 genomes]
rs12530981	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12533560	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12534466	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12536017	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12536146	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12536575	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12537161	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12538083	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12538333	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12538641	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540168	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12666427	0.91[EUR][1000 genomes]
rs12706626	0.86[EUR][1000 genomes]
rs12706629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13228116	0.91[EUR][1000 genomes]
rs13231916	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13240043	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13240512	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13307657	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1351471	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1383751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468377	0.89[EUR][1000 genomes]
rs1468378	0.89[EUR][1000 genomes]
rs1481328	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481329	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481337	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1481340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481341	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1481343	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1531715	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1531716	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552119	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552120	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1600738	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1600739	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1600740	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1600743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1600745	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1600746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16871295	0.83[EUR][1000 genomes]
rs17147494	0.88[EUR][1000 genomes]
rs17147496	0.88[EUR][1000 genomes]
rs17147583	0.89[EUR][1000 genomes]
rs1842615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1871770	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1904975	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1994022	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1994023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2017928	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040926	0.89[EUR][1000 genomes]
rs2054585	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2079368	0.91[EUR][1000 genomes]
rs2079369	0.86[EUR][1000 genomes]
rs2107936	0.86[EUR][1000 genomes]
rs2127971	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2170353	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2219953	0.82[ASN][1000 genomes]
rs2219954	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2286173	0.89[EUR][1000 genomes]
rs2286174	0.89[EUR][1000 genomes]
rs2301930	0.89[EUR][1000 genomes]
rs2402753	0.88[EUR][1000 genomes]
rs2402755	0.88[EUR][1000 genomes]
rs2402756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402760	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2402762	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28409696	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28491035	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28807101	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28817916	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28820311	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2896360	0.88[EUR][1000 genomes]
rs2896361	0.91[EUR][1000 genomes]
rs3213667	0.91[EUR][1000 genomes]
rs34014883	0.91[EUR][1000 genomes]
rs34395250	0.90[EUR][1000 genomes]
rs34600520	0.91[EUR][1000 genomes]
rs34618371	0.91[EUR][1000 genomes]
rs34630567	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34865746	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35184624	0.90[EUR][1000 genomes]
rs35332300	0.87[EUR][1000 genomes]
rs35630355	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3815221	0.91[EUR][1000 genomes]
rs3900363	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3903521	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3903522	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3903523	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3919896	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4146110	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4272297	0.84[AMR][1000 genomes]
rs4279518	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4283967	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4311608	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4319000	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4360235	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4377885	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4379394	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4383910	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4397336	0.84[EUR][1000 genomes]
rs4422720	0.90[EUR][1000 genomes]
rs4461840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4463363	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4467880	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4501523	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4529402	0.89[EUR][1000 genomes]
rs4552839	0.90[EUR][1000 genomes]
rs4568548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4584095	0.90[EUR][1000 genomes]
rs4728009	0.90[EUR][1000 genomes]
rs4728010	0.91[EUR][1000 genomes]
rs4728011	0.90[EUR][1000 genomes]
rs4728012	0.91[EUR][1000 genomes]
rs4731216	0.89[EUR][1000 genomes]
rs4731217	0.90[EUR][1000 genomes]
rs4731218	0.89[EUR][1000 genomes]
rs4731221	0.91[EUR][1000 genomes]
rs4731222	0.89[EUR][1000 genomes]
rs4731223	0.91[EUR][1000 genomes]
rs4731224	0.91[EUR][1000 genomes]
rs56321660	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57458159	0.91[EUR][1000 genomes]
rs62478914	0.89[EUR][1000 genomes]
rs6415362	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6466948	0.87[EUR][1000 genomes]
rs6466949	0.87[EUR][1000 genomes]
rs6466950	0.87[EUR][1000 genomes]
rs6466952	0.91[EUR][1000 genomes]
rs6466953	0.89[EUR][1000 genomes]
rs6466954	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6466955	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6466956	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6466960	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6466961	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6466962	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6466963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466967	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466970	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466971	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466972	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466982	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466990	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6945104	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6945951	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6948181	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6948345	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6949341	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6952529	0.82[AMR][1000 genomes]
rs6953168	0.91[EUR][1000 genomes]
rs6954614	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6956499	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6956638	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6959244	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6959491	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6959665	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6960027	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6960139	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6960504	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6960683	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6963177	0.87[EUR][1000 genomes]
rs6964090	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6966415	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6967988	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6968187	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6968573	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6968693	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6971179	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6971413	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973134	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6973447	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6973812	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6980448	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71213274	0.82[EUR][1000 genomes]
rs71576215	0.88[EUR][1000 genomes]
rs719972	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs720615	0.88[EUR][1000 genomes]
rs720616	0.88[EUR][1000 genomes]
rs727506	0.89[EUR][1000 genomes]
rs7357296	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7456392	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7776744	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7776821	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7777126	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7778544	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7778956	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7779594	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7781148	0.89[EUR][1000 genomes]
rs7782031	0.91[EUR][1000 genomes]
rs7782327	0.91[EUR][1000 genomes]
rs7782340	0.91[EUR][1000 genomes]
rs7782354	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7782525	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7783781	0.88[EUR][1000 genomes]
rs7786384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7787025	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7787765	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7788066	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7788458	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789859	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7790975	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7791399	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7791488	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7792883	0.88[EUR][1000 genomes]
rs7793258	0.88[EUR][1000 genomes]
rs7793441	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7794631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7794710	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7795199	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795218	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795233	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795492	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7795605	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795611	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795934	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7796015	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7796150	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7799518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7799523	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7799535	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7799747	0.87[EUR][1000 genomes]
rs7799938	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7801140	0.91[EUR][1000 genomes]
rs7802007	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802210	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7806126	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7807707	0.82[EUR][1000 genomes]
rs7808203	0.89[EUR][1000 genomes]
rs7811607	0.88[EUR][1000 genomes]
rs7811608	0.88[EUR][1000 genomes]
rs886704	0.85[EUR][1000 genomes]
rs900047	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9332427	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs962863	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9690998	0.81[EUR][1000 genomes]
rs9691875	0.80[ASN][1000 genomes]
rs9692367	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9886177	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv889135	chr7:124462081-124584834	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv464707	chr7:124486980-124572288	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv608341	chr7:124486980-124572288	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv889137	chr7:124513770-124584834	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv889138	chr7:124518766-124584834	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv608342	chr7:124549573-124600505	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7782410	RP11-3B12.1	cis	Artery Tibial	GTEx
rs7782410	RP11-3B12.4	cis	Artery Tibial	GTEx
rs7782410	RP11-3B12.1	cis	Artery Aorta	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124570000-124572200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124570200-124585400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:124570400-124571200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:124570400-124571200	Enhancers	K562	blood
5	chr7:124570400-124571800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:124570400-124574600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:124571000-124571200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:124571000-124571200	Enhancers	Brain Anterior Caudate	brain
9	chr7:124571000-124571200	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

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